Browse Element(s) Details


Os.27914.1.S1_at

Description gb:AK099630.1
DB_XREF= gi:32984839
TID=Os.27914.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27914 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013058B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013058B07, full insert sequence.
FL= gb:AK099630.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0239011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02350OsAffx.28988.1.S1_at11/118+900179..928280expressed protein
LOC_Os08g02350Os.16539.1.S1_at11/118+900179..928280expressed protein
LOC_Os08g02350OsAffx.21992.1.S1_at1/118+900179..928280expressed protein
LOC_Os08g02350OsAffx.30172.1.S1_at1/118+900179..928280expressed protein
LOC_Os08g02350Os.20190.1.S1_at1/118+900179..928280expressed protein
LOC_Os08g02360Os.47354.1.A1_at11/118+929664..9341323' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os08g02360OsAffx.9177.1.S1_x_at1/118+929664..9341323' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os08g02360Os.40400.1.S1_at1/118+929664..9341323' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os08g02370Os.27951.1.S1_at11/118+934508..938062galactosyltransferase family protein, putative, expressed
LOC_Os08g02380Os.18328.1.S1_s_at11/118+941334..946233Kinesin motor domain containing protein, expressed
LOC_Os08g02380OsAffx.16789.1.S1_at11/118+941334..946233Kinesin motor domain containing protein, expressed
LOC_Os08g02390Os.27914.1.S1_at11/118+947342..949799RNA recognition motif family protein, expressed
LOC_Os08g02400OsAffx.16790.1.S1_s_at11/118+950035..95232240S ribosomal protein S13, putative, expressed
LOC_Os08g02410Os.15168.1.S1_at11/118+956242..95818840S ribosomal protein S13, putative, expressed
LOC_Os08g02420Os.8701.1.S1_at11/118+962973..963903EF hand family protein, expressed
LOC_Os08g02430OsAffx.16791.1.S1_at11/118+964591..965055hypothetical protein
LOC_Os08g02440Os.52478.1.S1_at11/118+967944..972565leucine-rich repeat transmembrane protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0009507cellular_componentchloroplast
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27914.1.S1_at--696--8971Chr08:948791..948811 (21 bp)
TGAACGCTCTCGATGGATTTGACCT
LOC_Os08g02390
Os.27914.1.S1_at--467--2531Chr08:948942..948966 (25 bp)
AACTATCATCCGACGTTGTTTCTAA
LOC_Os08g02390
Os.27914.1.S1_at--420--8951Chr08:948984..949008 (25 bp)
TGACTCATACGCCACCTGTGAAAGA
LOC_Os08g02390
Os.27914.1.S1_at--353--5571Chr08:949003..949027 (25 bp)
GAAAGACCACATCTTCGAGAGCCCA
LOC_Os08g02390
Os.27914.1.S1_at--263--2511Chr08:949046..949070 (25 bp)
AACATCGCGTGGTCTGTTGAGCCAC
LOC_Os08g02390
Os.27914.1.S1_at--1100--1331Chr08:949081..949105 (25 bp)
AGAGTACTTCTCTCAGTGCGGAACC
LOC_Os08g02390
Os.27914.1.S1_at--456--1131Chr08:949095..949119 (25 bp)
AGTGCGGAACCGTCGTCAGTACAAG
LOC_Os08g02390
Os.27914.1.S1_at--253--8051Chr08:949143..949167 (25 bp)
GGAGAGGCCGTGTCTATGGATTCCT
LOC_Os08g02390
Os.27914.1.S1_at--699--91Chr08:949162..949186 (25 bp)
ATTCCTCTCATTTGCTTCAGCTGAA
LOC_Os08g02390
Os.27914.1.S1_at--1095--551Chr08:949575..949599 (25 bp)
ATCCTCGTCAGGCAAGCTCATGAAG
LOC_Os08g02390
Os.27914.1.S1_at--281--8831Chr08:949668..949692 (25 bp)
TGATTGAGTTCGTCCTTGGGCGCAA
LOC_Os08g02390
Target Sequence 
TGAACGCTCTCGATGGATTTGACCTGGATGGGCGTGAAATGCTTGTAAAACTATCATCCGACGTTGTTTCTAAAAGGAGA
AACATCAACATGACTCATACGCCACCTGTGAAAGACCACATCTTCGAGAGCCCACACAAGATCTACGTTGGCAACATCGC
GTGGTCTGTTGAGCCACAAGAATTGCGAGAGTACTTCTCTCAGTGCGGAACCGTCGTCAGTACAAGGCTGCTGACAGATC
GCAAAGGAGGGAGAGGCCGTGTCTATGGATTCCTCTCATTTGCTTCAGCTGAAGAGCTTGAGGCTGCATTGAAGCTTGAC
AATACGCATTTTCATGGACGGAACATCCTCGTCAGGCAAGCTCATGAAGAGCGTCAGGCACACTGAACCGTCCAGGGATT
ATTGGAGACCTATTGNAATTTTGTCTAGCTTATTTGCTGATTGAGTTCGTCCTTGGGCGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27914.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis