Browse Element(s) Details


Os.27946.1.S1_at

Description gb:AK105720.1
DB_XREF= gi:32990929
TID=Os.27946.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27946 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-201-F11, full insert sequence.
FL= gb:AK105720.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g021901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02140Os.10262.1.S1_at11/118+709296..713823U-box domain containing protein, expressed
LOC_Os08g02150Os.57291.1.S1_at7/118+714171..715518expressed protein
LOC_Os08g02160OsAffx.16786.1.S1_at11/118+725881..728248No apical meristem protein, expressed
LOC_Os08g02170Os.51205.1.S1_at11/118+728293..729317expressed protein
LOC_Os08g02180Os.52993.1.S1_at11/118+728348..728904expressed protein
LOC_Os08g02190OsAffx.5680.1.S1_at10/118+732945..739124expressed protein
LOC_Os08g02190Os.27946.1.S1_at1/118+732945..739124expressed protein
LOC_Os08g02200Os.51266.1.S1_at11/118+740152..740787expressed protein
LOC_Os08g02210Os.10410.1.S1_at11/118+744994..746908expressed protein
LOC_Os08g02220Os.54829.1.S1_at11/118+756868..758778Endoglucanase 1 precursor, putative, expressed
LOC_Os08g02230Os.27067.2.A1_at11/118+761993..764528plant-specific FAD-dependent oxidoreductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27946.1.S1_at--956--9311Chr04:30174386..30174410 (25 bp)
TCGCCTACAACTGATAGATACTTTA
NONE
Os.27946.1.S1_at--702--6472Chr04:19463084..19463112 (25 bp)
GATACTTTAGTTGATATTTCTGGCA
NONE
Os.27946.1.S1_at--968--8271Chr04:30174349..30174373 (25 bp)
GGCATGTTCCATTCAATTCTTTGTA
NONE
Os.27946.1.S1_at--11--3151Chr04:30174335..30174359 (25 bp)
AATTCTTTGTAGCTCCTGCAGATGT
NONE
Os.27946.1.S1_at--759--1591Chr04:30174325..30174349 (25 bp)
AGCTCCTGCAGATGTTGTTCTTGGA
NONE
Os.27946.1.S1_at--160--6971Chr04:30174287..30174311 (25 bp)
GTAGCATTTCTATTAGATTCCTAGG
NONE
Os.27946.1.S1_at--365--6571Chr04:30174272..30174296 (25 bp)
GATTCCTAGGATTCTTTACCAGTTT
NONE
Os.27946.1.S1_at--1145--8731Chr04:30174209..30174233 (25 bp)
TGTAAGTATCAGACCACCATCTTGA
NONE
Os.27946.1.S1_at--206--1732Chr08:734655..735164 (25 bp)
ACCATCTTGATACAGTGACCCATTT
LOC_Os08g02190
Os.27946.1.S1_at--487--9871Chr04:30174184..30174208 (25 bp)
TACAGTGACCCATTTATGTTTGATG
NONE
Os.27946.1.S1_at--541--9651Chr04:30174148..30174172 (25 bp)
TCAGCAAGCTTTCAACCTTGTACAA
NONE
Target Sequence 
TCGCCTACAACTGATAGATACTTTAGTTGATATTTCTGGCATGTTCCATTCAATTCTTTGTAGCTCCTGCAGATGTTGTT
CTTGGAGAGAATATTTCTTGTAGCATTTCTATTAGATTCCTAGGATTCTTTACCAGTTTTTTAGTGTACTAATTTTGATG
CAATATTTTATTGTGGATGTAAGTATCAGACCACCATCTTGATACAGTGACCCATTTATGTTTGATGATAACAACANTTC
AGCAAGCTTTCAACCTTGTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27946.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis