Browse Element(s) Details


Os.27955.1.S2_at

Description gb:BX927631
DB_XREF= gi:41881867
DB_XREF=BX927631
CLONE=p552b12p3
TID=Os.27955.1
CNT=10
FEA=FLmRNA
TIER=ConsEnd
STK=0
UG=Os.27955 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative regulatory protein (OSJNBb0096M04.35), mRNA
FL= gb:AK069826.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g632709/11regulatory protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63230OsAffx.22641.1.S1_at11/113+35666801..35668212retrotransposon protein, putative, LINE subclass
LOC_Os03g63240Os.49396.1.S1_x_at1/113+35668814..35671051NB-ARC domain containing protein, expressed
LOC_Os03g63250Os.7292.1.S1_at11/113+35675018..35680540brefeldin A-sensitive Golgi protein, putative, expressed
LOC_Os03g63260Os.44933.1.S1_at11/113+35680764..35687107pentatricopeptide, putative, expressed
LOC_Os03g63260Os.44933.2.S1_at10/113+35680764..35687107pentatricopeptide, putative, expressed
LOC_Os03g63260Os.44933.2.S1_x_at10/113+35680764..35687107pentatricopeptide, putative, expressed
LOC_Os03g63260Os.22353.3.S1_x_at2/113+35680764..35687107pentatricopeptide, putative, expressed
LOC_Os03g63270Os.27955.2.S1_x_at11/113+35692302..35696744regulatory protein, putative, expressed
LOC_Os03g63270Os.27955.2.S1_at11/113+35692302..35696744regulatory protein, putative, expressed
LOC_Os03g63270Os.27955.1.S1_at10/113+35692302..35696744regulatory protein, putative, expressed
LOC_Os03g63270Os.27955.1.S2_at9/113+35692302..35696744regulatory protein, putative, expressed
LOC_Os03g63280Os.10657.1.S1_at11/113+35705897..35707930regulatory protein, putative, expressed
LOC_Os03g63290Os.25462.1.S1_at11/113+35708735..35711180oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os03g63300Os.33275.1.S1_at11/113+35711634..35716393NLI interacting factor, putative, expressed
LOC_Os03g63300Os.26818.2.S1_at1/113+35711634..35716393NLI interacting factor, putative, expressed
LOC_Os03g63310Os.44934.1.S1_at11/113+35716842..35720269Cytochrome P450 71E1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27955.1.S2_at--781--8111Chr03:35696310..35696334 (25 bp)
GGACGTGTTCAACCTGATCAAGCAC
LOC_Os03g63270
Os.27955.1.S2_at--971--7531Chr03:35696390..35696414 (25 bp)
GTGGCTTCTGTCAGCTCAGCAAGGA
LOC_Os03g63270
Os.27955.1.S2_at--1025--471Chr03:35696414..35696438 (25 bp)
ATCTGAACAAGATCTGCACGCTCCA
LOC_Os03g63270
Os.27955.1.S2_at--651--4651Chr03:35696486..35696510 (25 bp)
GCGTCCTCGACGTCTGGAGGAACTA
LOC_Os03g63270
Os.27955.1.S2_at--1021--8272Chr03:35696566..35696590 (25 bp)
GGCATCTGCATCCACTGATCGATCG
LOC_Os03g63270
Os.27955.1.S2_at--647--2171Chr03:35696616..35696640 (25 bp)
ACACGCAGCGTTCAGCATTGCTGGA
LOC_Os03g63270
Os.27955.1.S2_at--1069--171Chr03:35696661..35696685 (25 bp)
ATTTAGCTAGGCGATCGCTCGACTG
LOC_Os03g63270
Os.27955.1.S2_at--634--1952Chr03:35696682..35696706 (25 bp)
ACTGCAGGCCGGTTAATTTCTCGAG
LOC_Os03g63270
Os.27955.1.S2_at--437--172Chr03:35699362..35699386 (25 bp)
ATTTCTCGAGCTGCCAAATTCTTTC
NONE
Os.27955.1.S2_at--1130--4552Chr03:35699403..35699427 (25 bp)
GCGCCGATTCTTTTTGTCAAGTTAG
NONE
Os.27955.1.S2_at--1107--91Chr03:35696835..35696859 (25 bp)
ATTCTAGCATGCTTGTATCCCGGAG
NONE
Target Sequence 
GGACGTGTTCAACCTGATCAAGCACGAGCAGCAGGCGAAGCTGGGCATCGCCATCCAGTTCCTCGACACCACNTACATNC
AGTGGCTTCTGTCAGCTCAGCAAGGATCTGAACAAGATCTGCACGCTCCATGCCAACTGCTGTGTTGGCCTCGGCGCCAA
GATGCACGACCTCCGAGGCGTCCTCGACGTCTGGAGGAACTACACGGCGGCGCCGCCCGACGAGCGGCGCTCGGGCAAGT
TCCAGTGGAAGCTCCCCGGCATCTGCATCCACTGATCGATCGATCGATCATATGTTCATATGCATATACACGCAGCGTTC
AGCATTGCTGGATTGCCTTGGCTGCTTGGTTAATTTAGCTAGGCGATCGCTCGACTGCAGGCCGGTTAATTTCTCGAGCT
GCCAAATTCTTTCTCCTCAATTATNAGNNGCGCCGATTCTTTTTGTCAAGTTAGGNNNNTCTATATATTAAGTTATTACA
TCATATATTTATACGTACGTACGTACGTATGTATACAGATTAATTCTAGCATGCTTGTATCCCGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27955.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis