Browse Element(s) Details


Os.27955.2.S1_x_at

Description gb:AK106469.1
DB_XREF= gi:32991678
TID=Os.27955.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27955 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative regulatory protein (OSJNBb0096M04.35), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-H09, full insert sequence.
FL= gb:AK106469.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6327011/11regulatory protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63230OsAffx.22641.1.S1_at11/113+35666801..35668212retrotransposon protein, putative, LINE subclass
LOC_Os03g63240Os.49396.1.S1_x_at1/113+35668814..35671051NB-ARC domain containing protein, expressed
LOC_Os03g63250Os.7292.1.S1_at11/113+35675018..35680540brefeldin A-sensitive Golgi protein, putative, expressed
LOC_Os03g63260Os.44933.1.S1_at11/113+35680764..35687107pentatricopeptide, putative, expressed
LOC_Os03g63260Os.44933.2.S1_at10/113+35680764..35687107pentatricopeptide, putative, expressed
LOC_Os03g63260Os.44933.2.S1_x_at10/113+35680764..35687107pentatricopeptide, putative, expressed
LOC_Os03g63260Os.22353.3.S1_x_at2/113+35680764..35687107pentatricopeptide, putative, expressed
LOC_Os03g63270Os.27955.2.S1_x_at11/113+35692302..35696744regulatory protein, putative, expressed
LOC_Os03g63270Os.27955.2.S1_at11/113+35692302..35696744regulatory protein, putative, expressed
LOC_Os03g63270Os.27955.1.S1_at10/113+35692302..35696744regulatory protein, putative, expressed
LOC_Os03g63270Os.27955.1.S2_at9/113+35692302..35696744regulatory protein, putative, expressed
LOC_Os03g63280Os.10657.1.S1_at11/113+35705897..35707930regulatory protein, putative, expressed
LOC_Os03g63290Os.25462.1.S1_at11/113+35708735..35711180oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os03g63300Os.33275.1.S1_at11/113+35711634..35716393NLI interacting factor, putative, expressed
LOC_Os03g63300Os.26818.2.S1_at1/113+35711634..35716393NLI interacting factor, putative, expressed
LOC_Os03g63310Os.44934.1.S1_at11/113+35716842..35720269Cytochrome P450 71E1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27955.2.S1_x_at--691--3371Chr03:35692513..35692537 (25 bp)
CACCATCCTGCCACAAGAAGCAAGA
LOC_Os03g63270
Os.27955.2.S1_x_at--113--5171Chr03:35692532..35692556 (25 bp)
GCAAGAACCTCTCTTAATTTGAGCA
LOC_Os03g63270
Os.27955.2.S1_x_at--385--5951Chr03:35692552..35692576 (25 bp)
GAGCAAGAAACCATTCGTCACATCA
LOC_Os03g63270
Os.27955.2.S1_x_at--900--7091Chr03:35692568..35692592 (25 bp)
GTCACATCAACGGAGGAAGCAGCTA
LOC_Os03g63270
Os.27955.2.S1_x_at--1109--1511Chr03:35692680..35692704 (25 bp)
AGCAGCAGCATTAGCCCGCTGGTGT
LOC_Os03g63270
Os.27955.2.S1_x_at--732--131Chr03:35692689..35692713 (25 bp)
ATTAGCCCGCTGGTGTCGTTCGTGC
LOC_Os03g63270
Os.27955.2.S1_x_at--1024--4191Chr03:35692919..35692943 (25 bp)
CCCCGTCCAGGTATGCACATATTTG
LOC_Os03g63270
Os.27955.2.S1_x_at--1138--7851Chr03:35692928..35692952 (25 bp)
GGTATGCACATATTTGCCATTTTTT
LOC_Os03g63270
Os.27955.2.S1_x_at--429--10411Chr03:35692953..35692977 (25 bp)
TTATTGCTTCAATATGCTATGAACA
LOC_Os03g63270
Os.27955.2.S1_x_at--88--5511Chr03:35692973..35692997 (25 bp)
GAACAAAACGAATTGATTGGCACCA
LOC_Os03g63270
Os.27955.2.S1_x_at--292--31Chr03:35692988..35693012 (25 bp)
ATTGGCACCAATATCATTTCTGAAG
LOC_Os03g63270
Target Sequence 
CACCATCCTGCCACAAGAAGCAAGAACCTCTCTTAATTTGAGCAAGAAACCATTCGTCACATCAACGGAGGAAGCAGCTA
TAGTTTGATTGATTGGTTGATCGATCGATGCTGGGCGGCGGCAAGATGAAGGGTGGGGAGACGATGGGCGGCGGCGGCGG
CAGCGGCAGCAGCAGCATTAGCCCGCTGGTGTCGTTCGTGCTGGGCGCCGCCATGGCCACCGTCTGCATCCTCTTCGTCA
TGTCCGCCAGCCCGGGACGCCGCCTCGCTGACATCTCCGCCTGGAGCAACGCCGACGACGCGCCGCCGCTGCCGCTCCCG
TTGCAGGACGCCGCCGTCGACTCCAACGACTCGCTGGCCGCCGCCGCCGCCGCCAACGTCACCGTCGTTGCTGCTCCGGC
TCCCGCCCCCGTCCAGGTATGCACATATTTGCCATTTTTTTTATTGCTTCAATATGCTATGAACAAAACGAATTGATTGG
CACCAATATCATTTCTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27955.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis