Browse Element(s) Details


Os.27966.1.S1_a_at

Description gb:AK120681.1
DB_XREF= gi:37990304
TID=Os.27966.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27966 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0468B07.16 (P0468B07.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013162P12, full insert sequence.
FL= gb:AK120681.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5949011/11FAD-dependent oxidoreductase family protein, putative, expressed
LOC_Os08g367601/11Remorin, C-terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59440Os.10369.1.S1_a_at10/111+34705945..34709933BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os01g59450OsAffx.2365.1.S1_at11/111+34712575..34716255hypothetical protein
LOC_Os01g59460OsAffx.11661.1.S1_x_at11/111+34724153..34724440hypothetical protein
LOC_Os01g59470OsAffx.23857.1.S1_at11/111+34725279..34726990hypothetical protein
LOC_Os01g59480OsAffx.11662.1.S1_at11/111+34728561..34729955hypothetical protein
LOC_Os01g59490Os.27966.1.S1_a_at11/111+34733225..34736049FAD-dependent oxidoreductase family protein, putative, expressed
LOC_Os01g59500Os.37510.1.S1_at11/111+34736075..34739419U3 small nucleolar RNA-associated protein 11, putative, expressed
LOC_Os01g59500OsAffx.11663.1.S1_x_at11/111+34736075..34739419U3 small nucleolar RNA-associated protein 11, putative, expressed
LOC_Os01g59500OsAffx.11663.1.S1_at10/111+34736075..34739419U3 small nucleolar RNA-associated protein 11, putative, expressed
LOC_Os01g59510Os.33770.1.S1_at11/111+34739702..34743837ribonuclease III family protein, putative, expressed
LOC_Os01g59510Os.33770.1.S1_s_at11/111+34739702..34743837ribonuclease III family protein, putative, expressed
LOC_Os01g59520Os.52792.1.S1_at11/111+34743963..34747179expressed protein
LOC_Os01g59530Os.2216.1.S1_at11/111+34747839..34750523Calmodulin, putative, expressed
LOC_Os01g59530OsAffx.31569.1.S1_x_at1/111+34747839..34750523Calmodulin, putative, expressed
LOC_Os01g59540NANA1+34752667..34753898GRF zinc finger family protein
LOC_Os01g59550OsAffx.985.7.S1_x_at11/111+34754561..34763164Protein kinase domain containing protein, expressed
LOC_Os01g59550OsAffx.985.2.S1_at11/111+34754561..34763164Protein kinase domain containing protein, expressed
LOC_Os01g59550OsAffx.985.3.S1_x_at2/111+34754561..34763164Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0003677molecular_functionDNA binding
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27966.1.S1_a_at--987--611Chr01:34735209..34735399 (25 bp)
ATGCTTCCTGAGTAGGTTCGATTAC
LOC_Os01g59490
Os.27966.1.S1_a_at--754--6931Chr01:34735388..34735410 (23 bp)
GTAGGTTCGATTACTCAGTCAATCC
LOC_Os01g59490
Os.27966.1.S1_a_at--839--2011Chr01:34735398..34735422 (25 bp)
ACTCAGTCAATCCTACCAGATGTTC
LOC_Os01g59490
Os.27966.1.S1_a_at--264--4351Chr01:34735413..34735437 (25 bp)
CCAGATGTTCTAAATTTTATCCTGT
LOC_Os01g59490
Os.27966.1.S1_a_at--579--3811Chr01:34735527..34735550 (24 bp)
CTCCTTCAGATTTTGTTATTCAGGG
LOC_Os01g59490
Os.27966.1.S1_a_at--1131--7931Chr01:34735629..34735653 (25 bp)
GGATATCCATGGTGTTCCTGGGCTG
LOC_Os01g59490
Os.27966.1.S1_a_at--358--4271Chr01:34735645..34735669 (25 bp)
CCTGGGCTGGTCAACTTGTTTGGAA
LOC_Os01g59490
Os.27966.1.S1_a_at--246--71Chr01:34735702..34735726 (25 bp)
ATTGCTGAATACATTGTTTCAAGGT
LOC_Os01g59490
Os.27966.1.S1_a_at--661--3951Chr01:34735797..34735821 (25 bp)
CGGAAGCCGGCAGGGTCATGTGAAT
LOC_Os01g59490
Os.27966.1.S1_a_at--264--8832Chr08:23082491..23082510 (20 bp)
TGATTGTGATCTTTGTTTGCCCTTT
LOC_Os08g36760
Os.27966.1.S1_a_at--203--9551Chr01:34735850..34735874 (25 bp)
TCTTTGTTTGCCCTTTGCATCAACA
LOC_Os01g59490
Target Sequence 
ATGCTTCCTGAGTAGGTTCGATTACTCAGTCAATCCTACCAGATGTTCTAAATTTTATCCTGTAATAAGGAAGTATTTTC
CTANCCTCAAGGATGATTCTTTGGAACCCNGTTATTNTGGGATACGACCNAAGCTTTNTGGCCCGGGNCAGCCTCCTTCA
GATTTTGTTATTCAGGGGGAGGATATCCATGGTGTTCCTGGGCTGGTCAACTTGTTTGGAATAGAATCCNCTGGTCTGAC
GTCAAGTTTGGCNATTGCTGAATACATTGTTTCAAGGTATTTGAGATGAGAGCCCCTCGAGTCAACACTTCATACTTTGT
TTCAAGGTATTNTCGCCTTCATGCGGCGCGGAAGCCGGCAGGGTCATGTGAATCNCATTACTTGNGNATTTATGATTGTG
ATCTTTGTTTGCCCTTTGCATCAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27966.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis