Browse Element(s) Details


Os.27987.1.S1_at

Description gb:CB966816
DB_XREF= gi:30228925
DB_XREF=NL43_F01
CLONE=NL43_F01
TID=Os.27987.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.27987 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_201175.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3478010/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34750NANA5+20532111..20535654retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g34760Os.14243.1.S1_at11/115+20537737..20545104expressed protein
LOC_Os05g34760OsAffx.22564.2.S1_at2/115+20537737..20545104expressed protein
LOC_Os05g34770OsAffx.27166.1.S1_at11/115+20546857..20549136Cytochrome c, putative, expressed
LOC_Os05g34770Os.10312.1.S1_at9/115+20546857..20549136Cytochrome c, putative, expressed
LOC_Os05g34770Os.57469.1.S1_x_at8/115+20546857..20549136Cytochrome c, putative, expressed
LOC_Os05g34780Os.27987.1.S1_at10/115+20553243..20560169retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g34780Os.38751.1.A1_at8/115+20553243..20560169retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g34780OsAffx.8469.1.S1_x_at1/115+20553243..20560169retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g34780OsAffx.1197.1.S1_x_at1/115+20553243..20560169retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g34790Os.51415.1.S1_at11/115+20563271..20565837GYF domain containing protein, expressed
LOC_Os05g34800Os.51415.2.S1_at11/115+20565099..20567342expressed protein
LOC_Os05g34800OsAffx.24510.1.S1_x_at1/115+20565099..20567342expressed protein
LOC_Os05g34810OsAffx.14964.1.S1_at11/115+20568066..20568638hypothetical protein
LOC_Os05g34820Os.11597.1.S1_at11/115+20579841..20585418expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27987.1.S1_at--390--4911NONE
GCTTCTGCGACCACAGGAACTGCCA
NONE
Os.27987.1.S1_at--271--951Chr05:20554303..20554327 (25 bp)
AGGAACTGCCACAAGGCTTACCATC
LOC_Os05g34780
Os.27987.1.S1_at--789--7951Chr05:20554338..20554362 (25 bp)
GGATAAGGATGACAGCTTCCTCAAT
LOC_Os05g34780
Os.27987.1.S1_at--308--2151Chr05:20554349..20554373 (25 bp)
ACAGCTTCCTCAATTCAGACGAACA
LOC_Os05g34780
Os.27987.1.S1_at--1081--2871Chr05:20555540..20555564 (25 bp)
AAGGGCGTTCATACTACCGATGCTT
LOC_Os05g34780
Os.27987.1.S1_at--726--631Chr05:20555559..20555583 (25 bp)
ATGCTTTTGTTGTCCGGATCACTCT
LOC_Os05g34780
Os.27987.1.S1_at--1079--7951Chr05:20555574..20555598 (25 bp)
GGATCACTCTGTTTGTCGTAGTTGT
LOC_Os05g34780
Os.27987.1.S1_at--667--2711Chr05:20555606..20555630 (25 bp)
AAGCAGAATTTGTCCCAGTCATGAG
LOC_Os05g34780
Os.27987.1.S1_at--1047--8611Chr05:20555639..20555663 (25 bp)
TGGGATTTTGCAACAACTGTTTGAG
LOC_Os05g34780
Os.27987.1.S1_at--939--5371Chr05:20555682..20555706 (25 bp)
GAAGAACGTCGATGTTGACTCTGAT
LOC_Os05g34780
Os.27987.1.S1_at--711--6631Chr05:20556467..20556491 (25 bp)
GTTGATTTCAGTGACAGGGAGACAT
LOC_Os05g34780
Target Sequence 
GCTTCTGCGACCACAGGAACTGCCACAAGGCTTACCATCCTGANGTGCGTGGATAAGGATGACAGCTTCCTCAATTCAGA
CGAACAATTCATTTGCAATTGGCATACATGTTTTATCTGCAAAGGGCGTTCATACTACCGATGCTTTTGTTGTCCGGATC
ACTCTGTTTGTCGTAGTTGTGTGAAACAAGCAGAATTTGTCCCAGTCATGAGGCAAACAATGGGATTTTGCAACAACTGT
TTGAGGATGGCAATCATGATTGAGAAGAACGTCGATGTTGACTCTGATGGGGAGAGGGTTGATTTCAGTGACAGGGAGAC
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27987.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis