Browse Element(s) Details


Os.28030.1.S1_s_at

Description gb:AK104912.1
DB_XREF= gi:32990121
TID=Os.28030.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.28030 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-047-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-047-C02, full insert sequence.
FL= gb:AK066125.1 gb:AK104912.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4816011/11xyloglucan endotransglucosylase/hydrolase protein 15precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48110NANA6+29110104..29114618retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48120NANA6+29114873..29116854retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48130OsAffx.22896.1.S1_x_at1/116+29118043..29119856retrotransposon protein, putative, unclassified
LOC_Os06g48140NANA6+29120168..29123346hypothetical protein
LOC_Os06g48150NANA6+29125049..29125381hypothetical protein
LOC_Os06g48160Os.28030.1.S1_at11/116+29132108..29133573xyloglucan endotransglucosylase/hydrolase protein 15precursor, putative, expressed
LOC_Os06g48160Os.28030.1.S1_s_at11/116+29132108..29133573xyloglucan endotransglucosylase/hydrolase protein 15precursor, putative, expressed
LOC_Os06g48160Os.28030.2.A1_at11/116+29132108..29133573xyloglucan endotransglucosylase/hydrolase protein 15precursor, putative, expressed
LOC_Os06g48170OsAffx.15981.1.S1_at11/116+29136090..29138508Brassinosteroid-regulated protein BRU1 precursor, putative, expressed
LOC_Os06g48180Os.27205.1.S1_at11/116+29143890..29145563Brassinosteroid-regulated protein BRU1 precursor, putative, expressed
LOC_Os06g48190OsAffx.27931.1.S1_at11/116+29146381..29147624expressed protein
LOC_Os06g48190OsAffx.5700.1.S1_x_at1/116+29146381..29147624expressed protein
LOC_Os06g48190OsAffx.27931.2.S1_x_at1/116+29146381..29147624expressed protein
LOC_Os06g48190OsAffx.27931.2.S1_at1/116+29146381..29147624expressed protein
LOC_Os06g48200Os.22839.1.S2_at11/116+29155430..29156885xyloglucan endotransglucosylase/hydrolase protein 15precursor, putative, expressed
LOC_Os06g48200Os.22839.1.S1_at11/116+29155430..29156885xyloglucan endotransglucosylase/hydrolase protein 15precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009664biological_processcell wall organization and biogenesis (sensu Magnoliophyta)
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0005618cellular_componentcell wall
GO:0016762molecular_functionxyloglucan:xyloglucosyl transferase activity
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28030.1.S1_s_at--55--4111Chr06:29133236..29133260 (25 bp)
CGACATGAGCTACCGCCGCATGAGG
LOC_Os06g48160
Os.28030.1.S1_s_at--726--2531Chr06:29133288..29133312 (25 bp)
AACTACTGCACTGACGCCAAGCGGT
LOC_Os06g48160
Os.28030.1.S1_s_at--460--4511Chr06:29133330..29133354 (25 bp)
GCCGAGTGCAAGCTCCGTTGAGATC
LOC_Os06g48160
Os.28030.1.S1_s_at--299--1591Chr06:29133340..29133364 (25 bp)
AGCTCCGTTGAGATCGACACGAGAA
LOC_Os06g48160
Os.28030.1.S1_s_at--713--5351Chr06:29133362..29133386 (25 bp)
GAAGATGATCATAACGTACGCTACG
LOC_Os06g48160
Os.28030.1.S1_s_at--90--3532Chr06:29133387..29133411 (25 bp)
CATGCATGATCCGTCATCGATGAAA
LOC_Os06g48160
Os.28030.1.S1_s_at--306--5971Chr06:29133420..29133444 (25 bp)
GAGAAGAGCACGTCAGATGGCGAAT
LOC_Os06g48160
Os.28030.1.S1_s_at--940--8751Chr06:29133453..29133477 (25 bp)
TGTTTTGTTGCCACGGAGATGTAAA
LOC_Os06g48160
Os.28030.1.S1_s_at--281--3691Chr06:29133498..29133522 (25 bp)
CTTTGATATCTTTTTGTAACACGGG
LOC_Os06g48160
Os.28030.1.S1_s_at--626--7211Chr06:29133523..29133547 (25 bp)
GTCGATGTACGTACCAAGTTTGATA
LOC_Os06g48160
Os.28030.1.S1_s_at--687--2251Chr06:29133547..29133571 (25 bp)
AAATTTTAGTGAGCTGCTTTTAGCC
LOC_Os06g48160
Target Sequence 
CGACATGAGCTACCGCCGCATGAGGTGGGTGCAGAGGAAGTTCATGATCTACAACTACTGCACTGACGCCAAGCGGTTCC
CCCAGGGCACCCCCGCCGAGTGCAAGCTCCGTTGAGATCGACACGAGAAGATGATCATAACGTACGCTACGCATGCATGA
TCCGTCATCGATGAAAAAAATGATGAGAAGAGCACGTCAGATGGCGAATAATGAATGTGTTTTGTTGCCACGGAGATGTA
AATGTAGTATGCATATCGCATTCTTTGATATCTTTTTGTAACACGGGGTCGATGTACGTACCAAGTTTGATAAATTTTAG
TGAGCTGCTTTTAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28030.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis