Browse Element(s) Details

Os.28300.2.S2_a_at

Description

gb:AK061896.1
DB_XREF= gi:32971914
TID=Os.28300.2
CNT=330
FEA=FLmRNA
TIER=FL+Stack
STK=20
UG=Os.28300 (NCBI UniGene Cluster)
UG_TITLE=O.sativa (Taichung Native One) hsp82 mRNA for heat shock protein 82
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-041-G11, full insert sequence.
FL= gb:AK119663.1 gb:AK061896.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os09g30438	11/11	Heat shock protein 82, putative, expressed
LOC_Os09g30418	11/11	Hsp90 protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os09g30410	Os.51374.1.S1_at	10/11	9	+	18507898..18509774	expressed protein
LOC_Os09g30414	OsAffx.6453.1.S1_at	11/11	9	+	18520579..18523671	Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g30414	Os.11197.2.S1_x_at	11/11	9	+	18520579..18523671	Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g30414	OsAffx.14464.1.S1_x_at	1/11	9	+	18520579..18523671	Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g30418	Os.28300.2.S2_s_at	11/11	9	+	18523286..18528649	Hsp90 protein
LOC_Os09g30418	Os.28300.2.S1_a_at	11/11	9	+	18523286..18528649	Hsp90 protein
LOC_Os09g30418	Os.28300.2.S2_a_at	11/11	9	+	18523286..18528649	Hsp90 protein
LOC_Os09g30418	Os.22573.1.S1_x_at	11/11	9	+	18523286..18528649	Hsp90 protein
LOC_Os09g30418	Os.57460.1.S1_x_at	8/11	9	+	18523286..18528649	Hsp90 protein
LOC_Os09g30434	Os.11197.2.S1_x_at	5/11	9	+	18532125..18534298	Eukaryotic aspartyl protease family protein
LOC_Os09g30434	OsAffx.14464.1.S1_x_at	1/11	9	+	18532125..18534298	Eukaryotic aspartyl protease family protein
LOC_Os09g30438	Os.28300.2.S2_a_at	11/11	9	+	18534745..18540200	Heat shock protein 82, putative, expressed
LOC_Os09g30438	Os.22573.1.S1_x_at	11/11	9	+	18534745..18540200	Heat shock protein 82, putative, expressed
LOC_Os09g30438	Os.28300.2.S2_s_at	11/11	9	+	18534745..18540200	Heat shock protein 82, putative, expressed
LOC_Os09g30438	Os.28300.2.S1_a_at	11/11	9	+	18534745..18540200	Heat shock protein 82, putative, expressed
LOC_Os09g30438	Os.57460.1.S1_x_at	8/11	9	+	18534745..18540200	Heat shock protein 82, putative, expressed
LOC_Os09g30442	OsAffx.30100.1.S1_at	11/11	9	+	18541175..18541541	hypothetical protein
LOC_Os09g30446	OsAffx.17968.1.S1_at	11/11	9	+	18542825..18547989	Sodium/hydrogen exchanger family protein
LOC_Os09g30454	Os.53728.1.S1_at	11/11	9	+	18549670..18552850	wall-associated kinase-like 1, putative, expressed
LOC_Os09g30458	OsAffx.30101.1.S1_s_at	11/11	9	+	18557470..18562756	Subtilisin N-terminal Region family protein, expressed
LOC_Os09g30462	OsAffx.6454.1.S1_at	11/11	9	+	18563937..18564736	expressed protein
LOC_Os09g30466	Os.13862.1.S1_at	10/11	9	+	18565011..18568120	RNase Z, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006457	biological_process	protein folding
GO:0009408	biological_process	response to heat
GO:0009704	biological_process	de-etiolation
GO:0010157	biological_process	response to chlorate
GO:0046685	biological_process	response to arsenic
GO:0005739	cellular_component	mitochondrion
GO:0009570	cellular_component	chloroplast stroma
GO:0005524	molecular_function	ATP binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.28300.2.S2_a_at--855--911	2	Chr09:18536409..18536433 (25 bp)	TGCTGACCTCCGGTTTCAGCTTGGA	LOC_Os09g30438
Os.28300.2.S2_a_at--739--471	2	Chr09:18536408..18536432 (25 bp)	GCTGACCTCCGGTTTCAGCTTGGAG	LOC_Os09g30438
Os.28300.2.S2_a_at--437--385	2	Chr09:18536407..18536431 (25 bp)	CTGACCTCCGGTTTCAGCTTGGAGG	LOC_Os09g30438
Os.28300.2.S2_a_at--488--893	2	Chr09:18536406..18536430 (25 bp)	TGACCTCCGGTTTCAGCTTGGAGGA	LOC_Os09g30438
Os.28300.2.S2_a_at--688--579	2	Chr09:18536405..18536429 (25 bp)	GACCTCCGGTTTCAGCTTGGAGGAC	LOC_Os09g30438
Os.28300.2.S2_a_at--292--927	2	Chr09:18536401..18536425 (25 bp)	TCCGGTTTCAGCTTGGAGGACCCCA	LOC_Os09g30438
Os.28300.2.S2_a_at--121--787	2	Chr09:18536398..18536422 (25 bp)	GGTTTCAGCTTGGAGGACCCCAACA	LOC_Os09g30438
Os.28300.2.S2_a_at--264--683	2	Chr09:18536397..18536421 (25 bp)	GTTTCAGCTTGGAGGACCCCAACAC	LOC_Os09g30438
Os.28300.2.S2_a_at--645--1031	2	Chr09:18536396..18536420 (25 bp)	TTTCAGCTTGGAGGACCCCAACACC	LOC_Os09g30438
Os.28300.2.S2_a_at--669--963	2	Chr09:18536394..18536418 (25 bp)	TCAGCTTGGAGGACCCCAACACCTT	LOC_Os09g30438
Os.28300.2.S2_a_at--445--337	2	Chr09:18536393..18536417 (25 bp)	CAGCTTGGAGGACCCCAACACCTTC	LOC_Os09g30438

Target Sequence

TGCTGACCTCCGGTTTCAGCTTGGAGGACCCCAACACCTTC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis