Browse Element(s) Details


Os.28346.2.S1_at

Description gb:NM_187646.1
DB_XREF= gi:34902377
GEN=OSJNBa0009C08.22
TID=Os.28346.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.28346 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) Putative Zea mays retrotransposon Opie-2 (OSJNBa0009C08.22), mRNA.
PROD=Putative Zea mays retrotransposon Opie-2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0168410/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01630Os.2402.1.S1_at3/113+369916..370719Major pollen allergen Ory s 1 precursor, putative
LOC_Os03g01640Os.2405.1.S1_at11/113+375686..376785Major pollen allergen Ory s 1 precursor, putative, expressed
LOC_Os03g01650Os.2402.1.S1_at11/113+379438..380626Major pollen allergen Ory s 1 precursor, putative, expressed
LOC_Os03g01660Os.43902.1.S1_at11/113+384055..388497Skp1 family, dimerisation domain containing protein, expressed
LOC_Os03g01670Os.28346.5.S1_at11/113+391689..394364E1-E2 ATPase family protein
LOC_Os03g01670Os.28346.4.S1_x_at11/113+391689..394364E1-E2 ATPase family protein
LOC_Os03g01670Os.28346.5.S1_x_at10/113+391689..394364E1-E2 ATPase family protein
LOC_Os03g01670Os.28346.4.S1_at10/113+391689..394364E1-E2 ATPase family protein
LOC_Os03g01684Os.28346.5.S1_at11/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.5.S1_x_at10/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.2.S1_at10/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.3.S1_x_at10/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.4.S1_x_at9/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.1.S1_x_at6/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.1.S1_at2/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.49292.2.S1_x_at1/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01700Os.18734.1.S1_at10/113+408839..411219transmembrane protein, putative, expressed
LOC_Os03g01710Os.17650.1.S1_at11/113+418686..425932expressed protein
LOC_Os03g01710Os.17650.1.S2_at11/113+418686..425932expressed protein
LOC_Os03g01720OsAffx.12703.1.S1_at11/113+430744..437650hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28346.2.S1_at--774--10311Chr03:404652..404676 (25 bp)
TTTCTTGACTCTGGTGATTGCTGCT
LOC_Os03g01684
Os.28346.2.S1_at--320--1371Chr03:405034..405058 (25 bp)
AGAGCTGCTTTGTTCCTTCAGATGA
LOC_Os03g01684
Os.28346.2.S1_at--314--3491Chr03:405070..405094 (25 bp)
CAGGCTGTTGCACTGTTTGCTTATT
LOC_Os03g01684
Os.28346.2.S1_at--249--6591Chr03:405100..405124 (25 bp)
GATTGCTGCCATATCAGATGTCCTG
LOC_Os03g01684
Os.28346.2.S1_at--320--1311Chr03:405115..405139 (25 bp)
AGATGTCCTGGACCTGTTGTAACAT
LOC_Os03g01684
Os.28346.2.S1_at--248--10691Chr03:405140..405164 (25 bp)
TTGCCTTTATTTTTACCCAGATGGT
LOC_Os03g01684
Os.28346.2.S1_at--645--6651Chr03:405841..405865 (25 bp)
GTTGACGAAGCGTTCAGCCATCCTA
LOC_Os03g01684
Os.28346.2.S1_at--407--1511Chr03:406075..406099 (25 bp)
AGCAGTTATAACAAGGCGGCCACAA
LOC_Os03g01684
Os.28346.2.S1_at--948--2391NONE
AAACTTCAGCATGCGTGCGTCATCA
NONE
Os.28346.2.S1_at--965--2731Chr03:406734..406758 (25 bp)
AAGAATGCAGCTTTACCCTCTGAGT
LOC_Os03g01684
Os.28346.2.S1_at--781--5831Chr03:406893..406917 (25 bp)
GACCTAGTTGGCTGGGAGGCTATCC
LOC_Os03g01684
Target Sequence 
TTTCTTGACTCTGGTGATTGCTGCTTTTAATTACTGCTGTGGACAGTGCAAAATTGAACATAAATCACTGATGGACACCG
ATGAGGAAATTAGAGCTGCTTTGTTCCTTCAGATGAGCATTGTGAATCAGGCTGTTGCACTGTTTGCTTATTCAGATGAT
TGCTGCCATATCAGATGTCCTGGACCTGTTGTAACATTTGCCTTTATTTTTACCCAGATGGTGGCAACCCGTAAAGCTGT
AGGAGGTGACTTGGATTTTGCTATTGCAAAGGGTGTTGGTTGGCTCAAGGCTGGATTGATATGGCTGTACAACTTTGTCC
TGCTCTTTGTCCCTGTTGATTTGTCAGATATGGAAGCATGCAAAGATGACTGGAGAAAAATTGTTGACGAAGCGTTCAGC
CATCCTACATACAATTCTGCTCTGAATTCTGGAGGCGACAGCAGTTATAACAAGGCGGCCACAAACTTCAGCATGCGTGC
GTCATCATGTAAAAGAATGCAGCTTTACCCTCTGAGTTGTCATTCAGGCATGTATGACCTAGTTGGCTGGGAGGCTATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28346.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis