Browse Element(s) Details


Os.28346.4.S1_x_at

Description gb:NM_187645.1
DB_XREF= gi:34902375
TID=Os.28346.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.28346 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative Zea mays retrotransposon Opie-2 (OSJNBa0009C08.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) Hypothetical protein (OSJNBa0009C08.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0167011/11E1-E2 ATPase family protein
LOC_Os03g016849/11retrotransposon protein, putative, unclassified
LOC_Os03g132609/11retrotransposon protein, putative, unclassified
LOC_Os04g575809/11retrotransposon protein, putative, unclassified
LOC_Os03g631248/11retrotransposon protein, putative, unclassified
LOC_Os04g575708/11retrotransposon protein, putative, unclassified
LOC_Os08g306701/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01620NANA3+368102..368392hypothetical protein
LOC_Os03g01630Os.2402.1.S1_at3/113+369916..370719Major pollen allergen Ory s 1 precursor, putative
LOC_Os03g01640Os.2405.1.S1_at11/113+375686..376785Major pollen allergen Ory s 1 precursor, putative, expressed
LOC_Os03g01650Os.2402.1.S1_at11/113+379438..380626Major pollen allergen Ory s 1 precursor, putative, expressed
LOC_Os03g01660Os.43902.1.S1_at11/113+384055..388497Skp1 family, dimerisation domain containing protein, expressed
LOC_Os03g01670Os.28346.5.S1_at11/113+391689..394364E1-E2 ATPase family protein
LOC_Os03g01670Os.28346.4.S1_x_at11/113+391689..394364E1-E2 ATPase family protein
LOC_Os03g01670Os.28346.5.S1_x_at10/113+391689..394364E1-E2 ATPase family protein
LOC_Os03g01670Os.28346.4.S1_at10/113+391689..394364E1-E2 ATPase family protein
LOC_Os03g01684Os.28346.5.S1_at11/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.5.S1_x_at10/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.2.S1_at10/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.3.S1_x_at10/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.4.S1_x_at9/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.1.S1_x_at6/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.1.S1_at2/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.49292.2.S1_x_at1/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01700Os.18734.1.S1_at10/113+408839..411219transmembrane protein, putative, expressed
LOC_Os03g01710Os.17650.1.S1_at11/113+418686..425932expressed protein
LOC_Os03g01710Os.17650.1.S2_at11/113+418686..425932expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008553molecular_functionhydrogen-exporting ATPase activity, phosphorylative mechanism
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28346.4.S1_x_at--751--351Chr03:393149..393173 (25 bp)
ATAACCTTGCTGTTGATGGGTATCA
LOC_Os03g01670
Os.28346.4.S1_x_at--709--6891Chr03:393168..393192 (25 bp)
GTATCAGGCCATAGCTGTAGGACAT
LOC_Os03g01670
Os.28346.4.S1_x_at--891--16513Chr08:18776595..18776615 (21 bp)
AGCCGTTCCACGTGGCCCAAGATGG
LOC_Os08g30670
Os.28346.4.S1_x_at--685--41711Chr06:2776206..2776230 (25 bp)
CCCAAGATGGTGAATGGCTCGGCTC
NONE
Os.28346.4.S1_x_at--638--90510Chr06:2776298..2776322 (25 bp)
TGCAGGCAGCTTGCATGCGCAAGGA
NONE
Os.28346.4.S1_x_at--560--41911Chr06:2776352..2776376 (25 bp)
CCCGTTTCGCGTGACTCGATCGGAG
NONE
Os.28346.4.S1_x_at--347--81111Chr06:2776394..2776418 (25 bp)
GGACCCACACGCGATTTTGCAAGCG
NONE
Os.28346.4.S1_x_at--249--23111Chr06:2776491..2776515 (25 bp)
AAAGGAGACGGAACGCGCACGACGC
NONE
Os.28346.4.S1_x_at--109--25711Chr06:2776524..2776548 (25 bp)
AACGTGGCAAGTTTGGATTCGTCAA
NONE
Os.28346.4.S1_x_at--444--60111Chr06:2776553..2776577 (25 bp)
GAGAGCACGCGGATTCATCAGCAAG
NONE
Os.28346.4.S1_x_at--673--1738Chr06:2776581..2776605 (25 bp)
ACCATGTGAGGGTTCGGATCGATGA
NONE
Target Sequence 
ATAACCTTGCTGTTGATGGGTATCAGGCCATAGCTGTAGGACATCAGGTGATCGGGGTCGATCTTGGTCAACGGCGGATC
GGGACTAGACTCAGGGAGGAGTTGAGGTCCAAAGCGATCAAGGATGCCGGGGAGGCCAAGCCAATCCAGCCGTTCCACGT
GGCCCAAGATGGTGAATGGCTCGGCTCGGCAGGCCTGCATCGTCCAAGCAGCGACGGCCCAAGACGGCGGCCCATGGCGC
ATGGGCTCAGGAGGTGCAGGCAGCTTGCATGCGCAAGGACGCGCGCGGAAAAACCGTACGCGGCAACCCCCGTTTCGCGT
GACTCGATCGGAGGCGGGTGCAGGAGCGCGGGACCCACACGCGATTTTGCAAGCGCGCGCGGGAGCGGCTCAGCGGGACG
CGTGGCGGCTTCGGGCTGGTTGGGCGCTGGCGAGCGCGCGCTGAGGAAAAGGAGACGGAACGCGCACGACGCGGCTGGGC
AACGTGGCAAGTTTGGATTCGTCAAGACGGAGAGCACGCGGATTCATCAGCAAGAAGACCATGTGAGGGTTCGGATCGAT
GA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28346.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis