Browse Element(s) Details


Os.28416.1.S1_at

Description gb:AK100037.1
DB_XREF= gi:32985246
TID=Os.28416.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28416 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013151A15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013151A15, full insert sequence.
FL= gb:AK100037.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0843010/11SacI homology domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08410OsAffx.12780.1.S1_at11/113+4290409..4293430dimethylaniline monooxygenase, putative, expressed
LOC_Os03g08420OsAffx.18485.5.S1_at10/113+4298894..4301620hypothetical protein
LOC_Os03g08430Os.47816.1.A1_at11/113+4306856..4315342SacI homology domain containing protein, expressed
LOC_Os03g08430Os.28416.1.S1_at10/113+4306856..4315342SacI homology domain containing protein, expressed
LOC_Os03g08440Os.10138.2.S1_a_at11/113+4315859..431806540S ribosomal protein SA, putative, expressed
LOC_Os03g08450Os.48055.1.S1_at11/113+4318567..4321853Eukaryotic translation initiation factor 3 subunit 11 family protein, expressed
LOC_Os03g08460Os.11120.1.S1_at11/113+4322842..4324818AP2 domain containing protein, expressed
LOC_Os03g08470Os.6009.3.S1_a_at11/113+4327853..4329648AP2 domain containing protein, expressed
LOC_Os03g08480Os.10398.1.S1_at11/113+4336420..4339667SAP-like protein BP-73, putative, expressed
LOC_Os03g08480Os.10398.1.S2_at3/113+4336420..4339667SAP-like protein BP-73, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0009826biological_processunidimensional cell growth
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0005794cellular_componentGolgi apparatus
GO:0004439molecular_functionphosphoinositide 5-phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28416.1.S1_at--641--3951Chr03:4314747..4314771 (25 bp)
CGGTTCGGTTGAGGTACACGATTGA
LOC_Os03g08430
Os.28416.1.S1_at--840--6151Chr03:4314757..4314781 (25 bp)
GAGGTACACGATTGAATTTCTATGG
LOC_Os03g08430
Os.28416.1.S1_at--718--1431Chr03:4314785..4314809 (25 bp)
AGAAGAATTGACCATACTGAAGACA
LOC_Os03g08430
Os.28416.1.S1_at--635--5971Chr03:4314818..4314842 (25 bp)
GAGAAACATATATCACATTCTTTGC
LOC_Os03g08430
Os.28416.1.S1_at--1018--1551Chr03:4314850..4314874 (25 bp)
AGCTTAGTTAGAATCTTTGGCAATA
LOC_Os03g08430
Os.28416.1.S1_at--361--2451Chr03:4315042..4315066 (25 bp)
AAAATACACTAATCGTTGGCAACAC
LOC_Os03g08430
Os.28416.1.S1_at--799--3271Chr03:4315061..4315085 (25 bp)
CAACACGGTAATGATTGCGAGACAA
LOC_Os03g08430
Os.28416.1.S1_at--417--1311Chr03:4315175..4315199 (25 bp)
AGATGTATGAAATTGCACCTGATGC
LOC_Os03g08430
Os.28416.1.S1_at--458--5091Chr03:4315189..4315213 (25 bp)
GCACCTGATGCATGAACTAATTTTC
LOC_Os03g08430
Os.28416.1.S1_at--1074--6631NONE
GTTGCAACATGATGGGTAATTACTA
NONE
Os.28416.1.S1_at--1090--2591Chr03:4315318..4315342 (25 bp)
AACGAATCAAGATACAGGTTTGTGC
LOC_Os03g08430
Target Sequence 
CGGTTCGGTTGAGGTACACGATTGAATTTCTATGGTGAAGAAGAATTGACCATACTGAAGACAATAAATAGGAGAAACAT
ATATCACATTCTTTGCAAGGGTTAGCTTAGTTAGAATCTTTGGCAATATGTTATAGGAAAAGGATAAAACAGAAAAAAGA
ACTTCTCAAACAAAAANNAAAAAAAAATGGAAATGCTAATCCCTGTTGTAAATATGTTATAGTATTATACATATTTACCA
ATTTTTACTTTACTTGCTCTCTGTATGGAACTTGCCTTTTCAGTCTTCACTGTACAAAATACACTAATCGTTGGCAACAC
GGTAATGATTGCGAGACAANNNAANAGNNNANANNNTNCAGGNGGNNNNNNGTTNNCAAGCNNNNNNTTTCAGTCAGCCT
GGNTGNGTGTTTTTTTTTTNCCTTTNCAGAGATGTATGAAATTGCACCTGATGCATGAACTAATTTTCTTCTGGGGNTCC
TGCTGATTCATGNTACCAGNATTGNCTTGCATGAACCCTGNACTNCATGATGAATGGGNNNNNTGTTGCAACATGATGGG
TAATTACTATATTAACGAATCAAGATACAGGTTTGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28416.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis