Browse Element(s) Details


Os.28422.1.S1_at

Description gb:AK120057.1
DB_XREF= gi:37989680
TID=Os.28422.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28422 (NCBI UniGene Cluster)
UG_TITLE=Chloroplast envelope calcium ATPase precursor, mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000P10, full insert sequence.
FL= gb:AK120057.1 gb:AK120495.1 gb:AK067259.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5161011/11Calcium-transporting ATPase 9, plasma membrane-type, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51570Os.55428.1.S1_at11/114+30331885..30333052IP05629p, putative, expressed
LOC_Os04g51580Os.13490.1.S1_at10/114+30333936..30339315Leucine Rich Repeat family protein, expressed
LOC_Os04g51580Os.52574.2.S1_x_at1/114+30333936..30339315Leucine Rich Repeat family protein, expressed
LOC_Os04g51580Os.46481.2.S1_x_at1/114+30333936..30339315Leucine Rich Repeat family protein, expressed
LOC_Os04g51590Os.53290.1.S1_at1/114+30344883..30349190retrotransposon protein, putative, unclassified
LOC_Os04g51600OsAffx.26562.1.S1_at10/114+30350935..30352635hypothetical protein
LOC_Os04g51600Os.47086.1.S1_at1/114+30350935..30352635hypothetical protein
LOC_Os04g51610Os.28422.1.S1_at11/114+30353060..30365210Calcium-transporting ATPase 9, plasma membrane-type, putative, expressed
LOC_Os04g51620NANA4+30375103..30376055hypothetical protein
LOC_Os04g51630Os.9363.2.S1_x_at10/114+30380850..3038326060S ribosomal protein L7-1, putative, expressed
LOC_Os04g51630Os.9363.1.S1_at10/114+30380850..3038326060S ribosomal protein L7-1, putative, expressed
LOC_Os04g51640OsAffx.26563.1.S1_at11/114+30386746..30387750hypothetical protein
LOC_Os04g51650OsAffx.14369.1.S1_at11/114+30388565..30388873hypothetical protein
LOC_Os04g51660Os.53597.1.S1_at11/114+30389791..30391315Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005886cellular_componentplasma membrane
GO:0005388molecular_functioncalcium-transporting ATPase activity
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28422.1.S1_at--653--2131Chr04:30354145..30354287 (25 bp)
ACAGTTGTACTGCAGGCGCTTATTG
LOC_Os04g51610
Os.28422.1.S1_at--583--4551Chr04:30354130..30354154 (25 bp)
GCGCTTATTGTTGAGTTCCTTGGCA
LOC_Os04g51610
Os.28422.1.S1_at--350--2651Chr04:30354092..30354116 (25 bp)
AACCAGACTCACCTGGCAGTTGTGG
LOC_Os04g51610
Os.28422.1.S1_at--874--8571Chr04:30354070..30354094 (25 bp)
TGGTTGGTGTCAATAGGTCTCGCCT
LOC_Os04g51610
Os.28422.1.S1_at--751--271Chr04:30354063..30354082 (20 bp)
ATAGGTCTCGCCTTTTTTAGCTGGC
LOC_Os04g51610
Os.28422.1.S1_at--630--4491Chr04:30353872..30353896 (25 bp)
GCCGTTGGCATTTGTGGGAAAGCTT
LOC_Os04g51610
Os.28422.1.S1_at--1044--5551Chr04:30353855..30353879 (25 bp)
GAAAGCTTATCCCTGTCCCAGAGAG
LOC_Os04g51610
Os.28422.1.S1_at--1011--10271Chr04:30353814..30353838 (25 bp)
TTTGCATGTTGCTGCCCAGGAAGTA
LOC_Os04g51610
Os.28422.1.S1_at--1137--2451Chr04:30353408..30353428 (21 bp)
AACAAGCTGCTGATGCCAAGGGTGA
LOC_Os04g51610
Os.28422.1.S1_at--213--7531Chr04:30353231..30353255 (25 bp)
GTGGCACTATTAACCATGCGTTCAG
LOC_Os04g51610
Os.28422.1.S1_at--754--2051Chr04:30353070..30353094 (25 bp)
ACTTCTTGGAGTTAGAGCCTATGCA
LOC_Os04g51610
Target Sequence 
ACAGTTGTACTGCAGGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACCTGGCAGTTGTGGTT
GGTGTCAATAGGTCTCGCCTTTTTTAGCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATTAG
GAGATTTCTTTGCATGTTGCTGCCCAGGAAGTAAACAAGCTGCTGATGCCAAGGGTGATGACGCTGATCACAGCGATGTA
TGAAGCTACGGATCAGAGGGAAACTTGTGCCAAGGTTTACTTTTAACATCATTAAGGTGTAATTAACTGCTATCAGGATT
GTACATACACTATGCTTCACATGGATAGGTCTGATTACCTTTGGAAAATTGTGGCACTATTAACCATGCGTTCAGATACT
TGACGGGGCAAGGTGTGATTTTGCGGCAGAGCTGCTGCAGGGAGATTTCTAATGGCGTTTTATTNGCGTATTGGAGAAAA
GATTTTGGATACTTATTTGAGCTTACTTCACTTTNANNNNNNNNNAGTTTTACTTCTTGGAGTTAGAGCCTATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28422.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis