Browse Element(s) Details

Os.28441.1.S1_at

Description

gb:AY286474.1
DB_XREF= gi:31075614
TID=Os.28441.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28441 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) zinc finger protein ZFP14 mRNA, complete cds.
PROD=zinc finger protein ZFP14
FL= gb:AY286474.1 gb:AK068861.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g60560	11/11	Zinc finger, C2H2 type family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g60520	Os.52542.1.S1_at	1/11	3	+	34336350..34339211	expressed protein
LOC_Os03g60524	Os.29987.1.S1_at	6/11	3	+	34343696..34344553	transposon protein, putative, unclassified
LOC_Os03g60524	Os.43567.1.S1_x_at	3/11	3	+	34343696..34344553	transposon protein, putative, unclassified
LOC_Os03g60524	Os.38172.1.S1_x_at	2/11	3	+	34343696..34344553	transposon protein, putative, unclassified
LOC_Os03g60530	Os.9042.1.S1_at	10/11	3	+	34346027..34349308	Ras-related protein ARA-3, putative, expressed
LOC_Os03g60540	OsAffx.13562.1.S1_at	11/11	3	+	34349796..34350356	Zinc finger, C2H2 type family protein
LOC_Os03g60550	Os.17427.1.S1_at	11/11	3	+	34351774..34358073	ThiF family protein, expressed
LOC_Os03g60550	OsAffx.25657.1.S1_s_at	1/11	3	+	34351774..34358073	ThiF family protein, expressed
LOC_Os03g60560	Os.28441.1.S1_at	11/11	3	+	34363114..34364034	Zinc finger, C2H2 type family protein, expressed
LOC_Os03g60570	Os.15874.1.A1_at	11/11	3	+	34366638..34367547	Zinc finger, C2H2 type family protein, expressed
LOC_Os03g60580	Os.39973.1.S1_s_at	11/11	3	+	34369405..34370315	Actin-depolymerizing factor 4, putative, expressed
LOC_Os03g60590	Os.12749.1.S1_s_at	11/11	3	+	34370595..34373158	Actin-depolymerizing factor 3, putative, expressed
LOC_Os03g60600	Os.16870.1.A1_at	11/11	3	+	34373945..34377386	Zinc knuckle family protein, expressed
LOC_Os03g60610	Os.7166.1.S1_at	11/11	3	+	34378288..34383367	CRAL/TRIO domain containing protein, expressed
LOC_Os03g60620	Os.11822.1.S1_at	11/11	3	+	34385257..34389873	Heat shock cognate 70 kDa protein 2, putative, expressed
LOC_Os03g60620	OsAffx.29152.1.S1_s_at	1/11	3	+	34385257..34389873	Heat shock cognate 70 kDa protein 2, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006979	biological_process	response to oxidative stress
GO:0009408	biological_process	response to heat
GO:0009409	biological_process	response to cold
GO:0009416	biological_process	response to light stimulus
GO:0009611	biological_process	response to wounding
GO:0009631	biological_process	cold acclimation
GO:0009643	biological_process	photosynthetic acclimation
GO:0010200	biological_process	response to chitin
GO:0042538	biological_process	hyperosmotic salinity response
GO:0045449	biological_process	regulation of transcription
GO:0003676	molecular_function	nucleic acid binding
GO:0003700	molecular_function	transcription factor activity
GO:0008270	molecular_function	zinc ion binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.28441.1.S1_at--605--937	1	Chr03:34363157..34363181 (25 bp)	TCGATCCATTAATTCACAAGCTTAT	LOC_Os03g60560
Os.28441.1.S1_at--308--1047	1	Chr03:34363165..34363189 (25 bp)	TTAATTCACAAGCTTATCGAATCGG	LOC_Os03g60560
Os.28441.1.S1_at--904--631	1	Chr03:34363191..34363215 (25 bp)	GATGAAGCACCCGAGGCAGGAGGAG	LOC_Os03g60560
Os.28441.1.S1_at--809--391	1	Chr03:34363231..34363255 (25 bp)	CTGGCGCTGAGCACGGACTGCTCGT	LOC_Os03g60560
Os.28441.1.S1_at--635--891	1	Chr03:34363238..34363262 (25 bp)	TGAGCACGGACTGCTCGTCGACGGC	LOC_Os03g60560
Os.28441.1.S1_at--52--293	1	Chr03:34363498..34363522 (25 bp)	AAGGAGCACAGGGACAAGCACGAGT	LOC_Os03g60560
Os.28441.1.S1_at--531--347	1	Chr03:34363506..34363530 (25 bp)	CAGGGACAAGCACGAGTGCCACATC	LOC_Os03g60560
Os.28441.1.S1_at--367--579	1	Chr03:34363624..34363648 (25 bp)	GACGACTGGGTCTGGCGCTGCGACG	LOC_Os03g60560
Os.28441.1.S1_at--182--423	1	Chr03:34363670..34363694 (25 bp)	CCGAGCCACCGGTGTTGCTGGAGTT	LOC_Os03g60560
Os.28441.1.S1_at--242--1071	1	Chr03:34363684..34363708 (25 bp)	TTGCTGGAGTTGTTCGCCTAGTTAC	LOC_Os03g60560
Os.28441.1.S1_at--967--1077	1	Chr03:34363693..34363717 (25 bp)	TTGTTCGCCTAGTTACCGCTGGTCT	LOC_Os03g60560

Target Sequence

TCGATCCATTAATTCACAAGCTTATCGAATCGGNGATGAAGCACCCGAGGCAGGAGGAGGAGGTGTCGCTGGCGCTGGCG
CTGAGCACGGACTGCTCGTCGACGGCGTCGGACTCGTCGGCGGCGGCGGCGGGCGGCGCGGCGAGGAGGAAGAGGGCGCG
GCGGAGGAGCGTGGTGGCGACGTCGGGGGAAGGGGAGTTCGTGTGCAAGACTTGCAGCCGCGCGTTCCCGACCTTCCAGG
CGCTCGGGGGCCACCGGACCAGCCACCTCCGCGGCCGGAGCAACGGGCTCGACCTCGGCGCCATCGGCGACAAGGCGATC
AGGCTGCACAGGGCGGCCGACAAGGAGCACAGGGACAAGCACGAGTGCCACATCTGCGGCCTCGGCTTCGAGATGGGCCA
GGCGCTCGGCGGACACATGCGGCGCCACCGCGAGGAGATGGCCGCCGCCGGCGGTGGATCCTCCGCCGACGACTGGGTCT
GGCGCTGCGACGCGCGGCCGGAGGGGATCGCCGCCGAGCCACCGGTGTTGCTGGAGTTGTTCGCCTAGTTACCGCTGGTC
T

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis