Browse Element(s) Details


Os.28482.1.S1_at

Description gb:AY323950.1
DB_XREF= gi:32492889
TID=Os.28482.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28482 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) calmodulin-binding protein mRNA, complete cds.
PROD=calmodulin-binding protein
FL= gb:AY323950.1 gb:AK071439.1 gb:AK069979.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4623011/11calmodulin-binding protein MPCBP, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g46180NANA11+27462960..27463325transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g46190NANA11+27464722..27468027transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g46200OsAffx.31507.1.S1_at11/1111+27471560..27476789Leucine Rich Repeat family protein
LOC_Os11g46200Os.52514.1.S1_x_at8/1111+27471560..27476789Leucine Rich Repeat family protein
LOC_Os11g46210Os.53653.1.S1_at11/1111+27477889..27482321NB-ARC domain containing protein, expressed
LOC_Os11g46210Os.53653.1.S2_at11/1111+27477889..27482321NB-ARC domain containing protein, expressed
LOC_Os11g46220OsAffx.19403.1.S1_s_at11/1111+27483708..27484457hypothetical protein
LOC_Os11g46230Os.28482.1.S1_at11/1111+27484924..27490262calmodulin-binding protein MPCBP, putative, expressed
LOC_Os11g46240NANA11+27491557..27498315retrotransposon protein, putative, unclassified, expressed
LOC_Os11g46250Os.38403.1.S1_s_at11/1111+27498803..27506962expressed protein
LOC_Os11g46260Os.14919.1.S1_at1/1111+27509843..27512311hypothetical protein
LOC_Os11g46260Os.56216.1.S1_at1/1111+27509843..27512311hypothetical protein
LOC_Os11g46270NANA11+27512604..27514961retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009846biological_processpollen germination
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28482.1.S1_at--193--2931Chr11:27485698..27485722 (25 bp)
AAGGCTAGAGCCCTGAAATCCTACT
LOC_Os11g46230
Os.28482.1.S1_at--221--8971Chr11:27485685..27485709 (25 bp)
TGAAATCCTACTCGGCTGCAACAAT
LOC_Os11g46230
Os.28482.1.S1_at--171--1471Chr11:27485537..27485558 (22 bp)
AGAAGGTTACATGCTCGAGGCGCGA
LOC_Os11g46230
Os.28482.1.S1_at--871--4451Chr11:27485488..27485512 (25 bp)
GCCTACGTCAATGCATTCTCGATAG
LOC_Os11g46230
Os.28482.1.S1_at--487--5911Chr11:27485464..27485488 (25 bp)
GAGCTAGAGCATGTTCCATCCAAGG
LOC_Os11g46230
Os.28482.1.S1_at--691--31Chr11:27485434..27485458 (25 bp)
ATTGGTGCACTTCTCTGCAAGCAAG
LOC_Os11g46230
Os.28482.1.S1_at--247--2891Chr11:27485412..27485436 (25 bp)
AAGGGTCAAGGTATCTCCCTGCAGC
LOC_Os11g46230
Os.28482.1.S1_at--990--4911Chr11:27485382..27485406 (25 bp)
GCTTCCTCTCGGATGCACTGAGAAT
LOC_Os11g46230
Os.28482.1.S1_at--164--5491Chr11:27485348..27485372 (25 bp)
GAACAGGATGGCTTGGCTTCATTTA
LOC_Os11g46230
Os.28482.1.S1_at--279--10791Chr11:27485279..27485303 (25 bp)
TTGTTTTCAGGCTGCGGTGATGCTT
LOC_Os11g46230
Os.28482.1.S1_at--653--8031Chr11:27485252..27485276 (25 bp)
GGAGTCTGACCCTGTAGAGAGTTTT
LOC_Os11g46230
Target Sequence 
AAGGCTAGAGCCCTGAAATCCTACTCGGCTGCAACAATGCATGCAGAAGGTTACATGCTCGAGGCGCGAGATCAGAACAA
GGNGGCATTGGCTGCCTACGTCAATGCATTCTCGATAGAGCTAGAGCATGTTCCATCCAAGGTGGCCATTGGTGCACTTC
TCTGCAAGCAAGGGTCAAGGTATCTCCCTGCAGCGAGATGCTTCCTCTCGGATGCACTGAGAATTGAGCCTACGAACAGG
ATGGCTTGGCTTCATTTAGGGAAAGTTCACAGGAATGATGGGAGGATCAATGATGCTGCTGATTGTTTTCAGGCTGCGGT
GATGCTTGAGGAGTCTGACCCTGTAGAGAGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28482.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis