Browse Element(s) Details


Os.28549.1.S1_at

Description gb:AK111391.1
DB_XREF= gi:32996600
TID=Os.28549.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.28549 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0487H02.11 (P0487H02.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-182-C05, full insert sequence.
FL= gb:AK111391.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4767011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47610OsAffx.4116.1.S1_x_at11/114+28041996..28042370hypothetical protein
LOC_Os04g47610OsAffx.4116.1.S1_at11/114+28041996..28042370hypothetical protein
LOC_Os04g47620OsAffx.29815.1.S1_x_at11/114+28043844..28046652Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os04g47630OsAffx.26505.1.S1_at11/114+28048432..28048922hypothetical protein
LOC_Os04g47640OsAffx.26506.1.S1_at11/114+28054429..28056732RWP-RK domain containing protein, expressed
LOC_Os04g47640Os.28979.1.S1_at1/114+28054429..28056732RWP-RK domain containing protein, expressed
LOC_Os04g47650OsAffx.26507.1.S1_x_at11/114+28059403..28059826expressed protein
LOC_Os04g47650OsAffx.11111.1.S1_x_at2/114+28059403..28059826expressed protein
LOC_Os04g47660NANA4+28061744..28063868retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g47670Os.28549.1.S1_at11/114+28064986..28066112expressed protein
LOC_Os04g47680OsAffx.14317.1.S1_at11/114+28068989..28072842Ser/Thr-rich protein T10 in DGCR region, putative, expressed
LOC_Os04g47680Os.51609.1.S1_at1/114+28068989..28072842Ser/Thr-rich protein T10 in DGCR region, putative, expressed
LOC_Os04g47690Os.46886.1.S1_at11/114+28074086..28077034HMG box family protein, expressed
LOC_Os04g47690Os.12612.1.S1_at11/114+28074086..28077034HMG box family protein, expressed
LOC_Os04g47700Os.16987.1.S1_at6/114+28077546..28085930expressed protein
LOC_Os04g47710OsAffx.31069.1.S1_x_at1/114+28090281..28093340hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28549.1.S1_at--706--6532Chr04:28065697..28065721 (25 bp)
GATTTTTGACGTGTCTTCAGGCTGT
LOC_Os04g47670
Os.28549.1.S1_at--919--10532Chr04:28065712..28065736 (25 bp)
TTCAGGCTGTTCTCGATGAGCTGTT
LOC_Os04g47670
Os.28549.1.S1_at--36--6552Chr04:28065757..28065781 (25 bp)
GATTTTCTTGAACTTGATCAGACAA
LOC_Os04g47670
Os.28549.1.S1_at--1006--10132Chr04:28065892..28065916 (25 bp)
TATCCAAGCAGATTGATCGGGCACA
LOC_Os04g47670
Os.28549.1.S1_at--656--10472Chr04:28065920..28065944 (25 bp)
TTACTGTGCCATTGCCAGTCATCTA
LOC_Os04g47670
Os.28549.1.S1_at--724--4412Chr04:28065933..28065957 (25 bp)
GCCAGTCATCTATTCAAGCACAGAG
LOC_Os04g47670
Os.28549.1.S1_at--922--10372Chr04:28066014..28066038 (25 bp)
TTTTCTCTGCTCTATTCTGCATATG
LOC_Os04g47670
Os.28549.1.S1_at--1066--10212Chr04:28066026..28066050 (25 bp)
TATTCTGCATATGCCATGGTCCTCC
LOC_Os04g47670
Os.28549.1.S1_at--258--3512Chr04:28066040..28066064 (25 bp)
CATGGTCCTCCATGCTATCTTTTTT
LOC_Os04g47670
Os.28549.1.S1_at--1071--10392Chr04:28066066..28066090 (25 bp)
TTTTGTACGTAAATCACCCATGAGA
LOC_Os04g47670
Os.28549.1.S1_at--66--1431Chr04:28066088..28066112 (25 bp)
AGAAATGAATATTGCACTTATCCGC
LOC_Os04g47670
Target Sequence 
GATTTTTGACGTGTCTTCAGGCTGTTCTCGATGAGCTGTTAATTAAATGAAATGTCAAGTGATTTTCTTGAACTTGATCA
GACAAAGAAACTATATTAGGCGAATATTCATGACCTGTTAGTCTGAAGCGGAAGTAGAATCAGATTTANCAAATGCAGAT
GTAGAATCAGATTTTAGCAAATGCAGATGTAGAACTATCCAAGCAGATTGATCGGGCACANTCTTACTGTGCCATTGCCA
GTCATCTATTCAAGCACAGAGCAAATTTAACTCAAGATTGTGAGATGATGCATGTACAACTGAATAAAGNTACAACCTTT
TCTCTGCTCTATTCTGCATATGCCATGGTCCTCCATGCTATCTTTTTTTTTTTGTACGTAAATCACCCATGAGAAATGAA
TATTGCACTTATCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28549.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis