Browse Element(s) Details


Os.286.1.S1_a_at

Description gb:AK064952.1
DB_XREF= gi:32974970
TID=Os.286.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.286 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001A01, full insert sequence.
FL= gb:AK064952.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1739011/11F-box family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17360NANA1+9987148..9992824retrotransposon protein, putative, unclassified
LOC_Os01g17370OsAffx.7292.1.S1_at1/111+9994366..9996904retrotransposon protein, putative, unclassified
LOC_Os01g17370OsAffx.7292.1.S1_x_at1/111+9994366..9996904retrotransposon protein, putative, unclassified
LOC_Os01g17380Os.47130.4.A1_x_at2/111+9997844..9998170retrotransposon protein, putative, unclassified
LOC_Os01g17390Os.286.1.S1_a_at11/111+10000730..10004531F-box family protein, putative, expressed
LOC_Os01g17396Os.27387.1.S1_at11/111+10004835..10008373expressed protein
LOC_Os01g17396Os.27387.1.S1_x_at11/111+10004835..10008373expressed protein
LOC_Os01g17396Os.27387.2.S1_x_at11/111+10004835..10008373expressed protein
LOC_Os01g17396Os.27387.2.S1_at11/111+10004835..10008373expressed protein
LOC_Os01g17402Os.31518.1.S1_at11/111+10008653..10012233Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g17402Os.31518.2.S1_x_at10/111+10008653..10012233Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g17410OsAffx.11090.1.S1_at11/111+10013004..10013216hypothetical protein
LOC_Os01g17420NANA1+10015530..10017154hypothetical protein
LOC_Os01g17430Os.1236.1.S1_at11/111+10018208..10023767Adaptin N terminal region family protein, expressed
LOC_Os01g17440Os.47130.4.A1_x_at3/111+10025332..10027790retrotransposon protein, putative, unclassified
LOC_Os01g17440Os.27455.2.S1_at1/111+10025332..10027790retrotransposon protein, putative, unclassified
LOC_Os01g17450Os.28943.1.S1_x_at4/111+10028759..10032001retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.286.1.S1_a_at--304--7371Chr01:10003949..10003971 (23 bp)
GTGACACTGTTGTTCTGGAGTTCAA
LOC_Os01g17390
Os.286.1.S1_a_at--894--8031Chr01:10003963..10003987 (25 bp)
GGAGTTCAACCAATACACACCTGGT
LOC_Os01g17390
Os.286.1.S1_a_at--272--8971Chr01:10004010..10004034 (25 bp)
TGAACCGGAAGGACCACAGGGAAGA
LOC_Os01g17390
Os.286.1.S1_a_at--65--9931Chr01:10004057..10004081 (25 bp)
TACGGTGGAATCAGGAAGCTCCGCA
LOC_Os01g17390
Os.286.1.S1_a_at--219--5411Chr01:10004071..10004095 (25 bp)
GAAGCTCCGCAGCAAGGATGAGATC
LOC_Os01g17390
Os.286.1.S1_a_at--1089--2311Chr01:10004098..10004122 (25 bp)
AAAGTGGAGACAGTTGTGGCCAACA
LOC_Os01g17390
Os.286.1.S1_a_at--1137--8651Chr01:10004112..10004136 (25 bp)
TGTGGCCAACAGACATTCTTGAGTA
LOC_Os01g17390
Os.286.1.S1_a_at--1103--8951Chr01:10004218..10004242 (25 bp)
TGAAACCTGACGAAAACGCCACCCA
LOC_Os01g17390
Os.286.1.S1_a_at--755--3431Chr01:10004345..10004369 (25 bp)
CAGATTGCTTCTGTAAACGGGCGTT
LOC_Os01g17390
Os.286.1.S1_a_at--778--5491Chr01:10004374..10004398 (25 bp)
GAACATGTATCAAGTCTACAGCATT
LOC_Os01g17390
Os.286.1.S1_a_at--815--5071Chr01:10004412..10004436 (25 bp)
GCAGCCTGTGCCTCTGCATGTTGTT
LOC_Os01g17390
Target Sequence 
GTGACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGCAGGCGCTGGTGAACCGGAAGGACCAC
AGGGAAGAGGGCAATGAGGGCGACGGTTTCTACGGTGGAATCAGGAAGCTCCGCAGCAAGGATGAGATCTCAAAGTGGAG
ACAGTTGTGGCCAACAGACATTCTTGAGTAGCAAGGACAGAGATTATTATTCCACTGTTGTTATTCATCAAGTTGCCANA
ATTGATGCTCTCCAATTGCTCATTCTGTATTCTGAAACCTGACGAAAACGCCACCCATCTCCTCCACTCAAGTNTGTATA
CACAAAGGATTGGAACATGGGGTGACAAAATTTGGTAGCTTGGGACACAATTGTGAAACTTACTGTAAGGCACGGATGCA
CAGATTGCTTCTGTAAACGGGCGTTAACTGAACATGTATCAAGTCTACAGCATTGTATGTGACTGCTGCAGCCTGTGCCT
CTGCATGTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.286.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis