Browse Element(s) Details


Os.28742.2.S1_at

Description gb:AK111142.1
DB_XREF= gi:32996351
TID=Os.28742.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28742 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative nucleic acid binding protein (OSJNBa0061L20.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-176-E03, full insert sequence.
FL= gb:AK111142.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1291010/11PHD finger protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12880OsAffx.9930.1.S1_at6/117+7389872..7391182transposon protein, putative, Pong sub-class
LOC_Os07g12890Os.27175.1.S1_a_at10/117+7392790..7396016ZIP zinc/iron transport family protein, expressed
LOC_Os07g12900OsAffx.10206.1.S1_at11/117+7404049..7407857cadmium-translocating P-type ATPase family protein, expressed
LOC_Os07g12910Os.28742.2.S1_at10/117+7412879..7416346PHD finger protein, putative, expressed
LOC_Os07g12910Os.28742.1.S1_at10/117+7412879..7416346PHD finger protein, putative, expressed
LOC_Os07g12920OsAffx.24510.1.S1_x_at11/117+7417152..7418006hypothetical protein
LOC_Os07g12940OsAffx.22429.1.S1_at11/117+7424213..7424729hypothetical protein
LOC_Os07g12950OsAffx.10155.1.S1_at3/117+7426994..7434261transposon protein, putative, Mutator sub-class
LOC_Os07g12950Os.41248.4.S1_x_at2/117+7426994..7434261transposon protein, putative, Mutator sub-class
LOC_Os07g12950OsAffx.15069.1.S1_at1/117+7426994..7434261transposon protein, putative, Mutator sub-class
LOC_Os07g12950OsAffx.10155.1.S1_x_at1/117+7426994..7434261transposon protein, putative, Mutator sub-class
LOC_Os07g12950OsAffx.20187.1.S1_at1/117+7426994..7434261transposon protein, putative, Mutator sub-class
LOC_Os07g12950OsAffx.380.1.S1_at1/117+7426994..7434261transposon protein, putative, Mutator sub-class
LOC_Os07g12959NANA7+7436149..7437641NA
LOC_Os07g12970NANA7+7439810..7443009hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28742.2.S1_at--753--3211NONE
CAACGGCAACGAGAGTAGAGTGCTA
NONE
Os.28742.2.S1_at--307--7311Chr07:7414195..7414219 (25 bp)
GTGCTAAACTGTGAAGTGCTGCCAT
LOC_Os07g12910
Os.28742.2.S1_at--1033--3671Chr07:7414165..7414189 (25 bp)
CTTTCATGTGCTTCGTTTGTGTTGC
LOC_Os07g12910
Os.28742.2.S1_at--345--5131Chr07:7414142..7414166 (25 bp)
GCACAAGGAGCTAAATCAGTCACAA
LOC_Os07g12910
Os.28742.2.S1_at--307--1551Chr07:7414090..7414114 (25 bp)
AGCATTATCTGTTCCTTATCTGTTT
LOC_Os07g12910
Os.28742.2.S1_at--238--10431Chr07:7414075..7414099 (25 bp)
TTATCTGTTTGTTTATGTTGCTTTC
LOC_Os07g12910
Os.28742.2.S1_at--234--751Chr07:7414050..7414074 (25 bp)
ATGTTTGTTTATAGTGTTTCGTTGC
LOC_Os07g12910
Os.28742.2.S1_at--1036--8771Chr07:7414036..7414060 (25 bp)
TGTTTCGTTGCTTATCTGTTGTCTT
LOC_Os07g12910
Os.28742.2.S1_at--1001--471Chr07:7414023..7414047 (25 bp)
ATCTGTTGTCTTTCGAAGGATTCAT
LOC_Os07g12910
Os.28742.2.S1_at--585--5311Chr07:7414009..7414033 (25 bp)
GAAGGATTCATATTGTACGCTGGAT
LOC_Os07g12910
Os.28742.2.S1_at--154--4391Chr07:7413971..7413995 (25 bp)
CCAAGGAAATATTGGGTCATGCCTC
LOC_Os07g12910
Target Sequence 
CAACGGCAACGAGAGTAGAGTGCTAAACTGTGAAGTGCTGCCATCTGTTCTTTCATGTGCTTCGTTTGTGTTGCACAAGG
AGCTAAATCAGTCACAAAATTTGTATTATCATTATGTAATGGGAAGCATTATCTGTTCCTTATCTGTTTGTTTATGTTGC
TTTCATGTTTGTTTATAGTGTTTCGTTGCTTATCTGTTGTCTTTCGAAGGATTCATATTGTACGCTGGATTATTTTTTAA
CTCCCAAGGAAATATTGGGTCATGCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28742.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis