Browse Element(s) Details


Os.28769.1.S1_at

Description gb:AK111105.1
DB_XREF= gi:32996314
TID=Os.28769.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28769 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0702H08.10 (P0702H08.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-176-A01, full insert sequence.
FL= gb:AK111105.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3461011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34550OsAffx.21292.2.S1_at11/111+19383075..19384830hypothetical protein
LOC_Os01g34550OsAffx.20907.1.S1_at1/111+19383075..19384830hypothetical protein
LOC_Os01g34560Os.33316.1.S1_at11/111+19386083..19388014very-long-chain fatty acid condensing enzyme, putative, expressed
LOC_Os01g34570NANA1+19389270..19390814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g34580OsAffx.21290.1.S1_at11/111+19397755..19398063hypothetical protein
LOC_Os01g34590Os.55307.1.S1_at9/111+19399908..19400737expressed protein
LOC_Os01g34600OsAffx.21289.2.S1_at11/111+19404931..19405467hypothetical protein
LOC_Os01g34600OsAffx.21289.2.S1_x_at11/111+19404931..19405467hypothetical protein
LOC_Os01g34610Os.28769.1.S1_at11/111+19406097..19410322expressed protein
LOC_Os01g34610Os.28769.1.S2_at11/111+19406097..19410322expressed protein
LOC_Os01g34620Os.37652.2.S1_at11/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34620Os.37652.1.S1_a_at11/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34620Os.37652.4.S1_x_at6/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34620Os.37652.4.S1_at2/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34630Os.54477.1.S1_at5/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34630OsAffx.20298.1.S1_x_at1/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34630OsAffx.20298.1.S1_at1/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34630OsAffx.28592.1.S1_at1/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34639NANA1+19433637..19434067NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28769.1.S1_at--1016--1251Chr01:19407460..19407484 (25 bp)
AGATTCACTTCTGCTTCCATTAAAA
LOC_Os01g34610
Os.28769.1.S1_at--843--2471Chr01:19407483..19407507 (25 bp)
AACACGGCATGCTAGTGGTGACCTT
LOC_Os01g34610
Os.28769.1.S1_at--717--9751Chr01:19407530..19407554 (25 bp)
TAATGATTGCACGTCCACCGAACAT
LOC_Os01g34610
Os.28769.1.S1_at--405--3011Chr01:19407561..19407585 (25 bp)
AATGCATCTGAATGGATTTCCTGAC
LOC_Os01g34610
Os.28769.1.S1_at--658--1051Chr01:19407994..19408018 (25 bp)
AGGTGTCCAAACACTTCTCACTTGG
LOC_Os01g34610
Os.28769.1.S1_at--378--9671Chr01:19408011..19408035 (25 bp)
TCACTTGGCTTTCCGGTTCAATGGG
LOC_Os01g34610
Os.28769.1.S1_at--1050--6311Chr01:19408064..19408088 (25 bp)
GATGAACAAGCAGCCGCAATCTCCA
LOC_Os01g34610
Os.28769.1.S1_at--894--5671Chr01:19408150..19408174 (25 bp)
GACTTTTCTCTTGGGATGGTCTCAA
LOC_Os01g34610
Os.28769.1.S1_at--632--651Chr01:19408198..19408222 (25 bp)
ATGCAGACAGATTTCCTAGCGAGAG
LOC_Os01g34610
Os.28769.1.S1_at--1111--1631Chr01:19408215..19408239 (25 bp)
AGCGAGAGGCTTTCTAATTCTTCTA
LOC_Os01g34610
Os.28769.1.S1_at--591--1371Chr01:19408245..19408269 (25 bp)
AGACCTACTGTTGAGGATCCTACTG
LOC_Os01g34610
Target Sequence 
AGATTCACTTCTGCTTCCATTAAAACACGGCATGCTAGTGGTGACCTTGAGACTGAAGATGGTATCATCATAATGATTGC
ACGTCCACCGAACATTTCTAAAATGCATCTGAATGGATTTCCTGACGAGGTGTCCAAACACTTCTCACTTGGCTTTCCGG
TTCAATGGGAGAATATTATTAATGCAAACATGGCAGAGATGAACAAGCAGCCGCAATCTCCACTAAAATCTACTGAATAT
TATATAGAAAAGTTTTTGCGGGGAAACTTAAAATATTCAATGGGACTTTTCTCTTGGGATGGTCTCAACATATATCAGGG
GTCTAGAAGTGATGCAGACAGATTTCCTAGCGAGAGGCTTTCTAATTCTTCTAATGGAAGACCTACTGTTGAGGATCCTA
CTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28769.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis