Browse Element(s) Details


Os.28769.1.S2_at

Description gb:CF328528
DB_XREF= gi:33805301
DB_XREF=NACL--03-H17.b1
CLONE=NACL--03-H17
TID=Os.28769.1
CNT=11
FEA=FLmRNA
TIER=ConsEnd
STK=0
UG=Os.28769 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0702H08.10 (P0702H08.10), mRNA
FL= gb:AK111105.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3461011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34550OsAffx.21292.2.S1_at11/111+19383075..19384830hypothetical protein
LOC_Os01g34550OsAffx.20907.1.S1_at1/111+19383075..19384830hypothetical protein
LOC_Os01g34560Os.33316.1.S1_at11/111+19386083..19388014very-long-chain fatty acid condensing enzyme, putative, expressed
LOC_Os01g34570NANA1+19389270..19390814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g34580OsAffx.21290.1.S1_at11/111+19397755..19398063hypothetical protein
LOC_Os01g34590Os.55307.1.S1_at9/111+19399908..19400737expressed protein
LOC_Os01g34600OsAffx.21289.2.S1_at11/111+19404931..19405467hypothetical protein
LOC_Os01g34600OsAffx.21289.2.S1_x_at11/111+19404931..19405467hypothetical protein
LOC_Os01g34610Os.28769.1.S1_at11/111+19406097..19410322expressed protein
LOC_Os01g34610Os.28769.1.S2_at11/111+19406097..19410322expressed protein
LOC_Os01g34620Os.37652.2.S1_at11/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34620Os.37652.1.S1_a_at11/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34620Os.37652.4.S1_x_at6/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34620Os.37652.4.S1_at2/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34630Os.54477.1.S1_at5/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34630OsAffx.20298.1.S1_x_at1/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34630OsAffx.20298.1.S1_at1/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34630OsAffx.28592.1.S1_at1/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34639NANA1+19433637..19434067NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28769.1.S2_at--512--4751Chr01:19409433..19409457 (25 bp)
GCTGCAAATACATGATACGCCCCGT
LOC_Os01g34610
Os.28769.1.S2_at--829--5351Chr01:19409793..19409817 (25 bp)
GAAGAGATCTTGAGCATTCTGCCTG
LOC_Os01g34610
Os.28769.1.S2_at--613--7691Chr01:19409825..19409849 (25 bp)
GGGTACTTTGGCTGCAGTACTGCCC
LOC_Os01g34610
Os.28769.1.S2_at--60--1191Chr01:19409840..19409864 (25 bp)
AGTACTGCCCCAATCTTTGAATCAG
LOC_Os01g34610
Os.28769.1.S2_at--294--5451Chr01:19409872..19409896 (25 bp)
GAACGCTACCAGACATCAAGTGCAG
LOC_Os01g34610
Os.28769.1.S2_at--496--251Chr01:19409955..19409979 (25 bp)
ATATCTAGACTGCACTGGTACTGGA
LOC_Os01g34610
Os.28769.1.S2_at--561--4852Chr04:16379053..16379345 (25 bp)
GCTACTGTTGTACTGGATGCCTGAA
NONE
Os.28769.1.S2_at--343--5552Chr04:16379343..16379367 (25 bp)
GAAACGTGTACATAATCAGCAGCTG
NONE
Os.28769.1.S2_at--977--3072Chr04:16379356..16379380 (25 bp)
AATCAGCAGCTGATGTCTCACTCTG
NONE
Os.28769.1.S2_at--130--771Chr01:19410033..19410057 (25 bp)
ATGTCTCACTCTGATACTTCTGTAG
LOC_Os01g34610
Os.28769.1.S2_at--229--6651Chr01:19410116..19410140 (25 bp)
GTTGACAGTTGACACCTTAAGCTAA
LOC_Os01g34610
Target Sequence 
GCTGCAAATACATGATACGCCCCGTAAAGGAAGAAGAGGACGTCTGCGAAAGAGCGAAAAGAGGAAGAGATCTTGAGCAT
TCTGCCTGAATCGTGGGGTACTTTGGCTGCAGTACTGCCCCAATCTTTGAATCAGTATTGGAGAACGCTACCAGACATCA
AGTGCAGGATGAATGGTGGATAATGTTCTGTATAACCTAGGAGTTCTTTTGCACACAAACCTTTTATATCTAGACTGCAC
TGGTACTGGAAATCAGGCTACTGTTGTACTGGATGCCTGAAACGTGTACATAATCAGCAGCTGATGTCTCACTCTGATAC
TTCTGTAGTATAGGTTGACTAAAATGTAGCAGTTATATATTGTAGAACAGCTTTATGCAATGGGTTGTTGACAGTTGACA
CCTTAAGCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28769.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis