Browse Element(s) Details


Os.2900.1.S1_at

Description gb:AK069049.1
DB_XREF= gi:32979073
TID=Os.2900.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2900 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003I23, full insert sequence.
FL= gb:AK069049.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5504011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55000NANA3+31215407..31215985hypothetical protein
LOC_Os03g55010Os.2901.1.S1_at3/113+31220943..31223588UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os03g55014NANA3+31227836..31228042hypothetical protein
LOC_Os03g55020OsAffx.3610.1.S1_at11/113+31231017..31232503Glucosyl transferase, putative, expressed
LOC_Os03g55030Os.2901.1.S1_at11/113+31233448..31236107Glucosyl transferase, putative, expressed
LOC_Os03g55034NANA3+31236193..31236883expressed protein
LOC_Os03g55040Os.2900.1.S1_at11/113+31237815..31239950UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os03g55050Os.54157.1.S1_at11/113+31241657..31244176Glucosyl transferase, putative, expressed
LOC_Os03g55050Os.54157.1.S2_at10/113+31241657..31244176Glucosyl transferase, putative, expressed
LOC_Os03g55070Os.5016.1.S1_at11/113+31254754..31257340UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os03g55080Os.50645.1.S1_a_at11/113+31262144..31265875WRKY DNA binding domain containing protein, expressed
LOC_Os03g55080Os.49478.1.S1_at1/113+31262144..31265875WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2900.1.S1_at--112--2011Chr03:31239381..31239405 (25 bp)
ACTCGACGATGGAAGGGCTCCGGCA
LOC_Os03g55040
Os.2900.1.S1_at--600--811Chr03:31239405..31239429 (25 bp)
ATGGTGTGCCGTTTCTGTGCTGGCC
LOC_Os03g55040
Os.2900.1.S1_at--545--4511Chr03:31239437..31239461 (25 bp)
GCCGACCAGTACTGCAACCAGAGCT
LOC_Os03g55040
Os.2900.1.S1_at--908--1031Chr03:31239543..31239567 (25 bp)
AGGTCGAGCAGCTGGTTGACGACAA
LOC_Os03g55040
Os.2900.1.S1_at--35--2211Chr03:31239611..31239635 (25 bp)
ACAAGCATAGCAGAGGGAGGGTCCT
LOC_Os03g55040
Os.2900.1.S1_at--606--7791Chr03:31239630..31239654 (25 bp)
GGTCCTCCCATGAAAACTTGCTGAA
LOC_Os03g55040
Os.2900.1.S1_at--922--5211Chr03:31239724..31239748 (25 bp)
GAATTAATCATTGAGGTGCTTTGGC
LOC_Os03g55040
Os.2900.1.S1_at--993--7311Chr03:31239739..31239763 (25 bp)
GTGCTTTGGCAAATTCATGGGACTG
LOC_Os03g55040
Os.2900.1.S1_at--963--7611Chr03:31239757..31239781 (25 bp)
GGGACTGGAAGTATACCTTCTCTTT
LOC_Os03g55040
Os.2900.1.S1_at--1149--6311Chr03:31239804..31239828 (25 bp)
GATGAATCACCAGTGCTACTGCTAA
LOC_Os03g55040
Os.2900.1.S1_at--600--5571Chr03:31239904..31239928 (25 bp)
GAAATGCTTATATTTGCAAACGGAT
LOC_Os03g55040
Target Sequence 
ACTCGACGATGGAAGGGCTCCGGCATGGTGTGCCGTTTCTGTGCTGGCCGTACTTCGCCGACCAGTACTGCAACCAGAGC
TACATATGCAATGTGTGGGGGACTGGAGTGAAGCTCCAGGCGGATGAGCGAGGGGTTGTCACCAAGGAGGAGATCAAGAA
CAAGGTCGAGCAGCTGGTTGACGACAAGGAGATCAAGGCGAGGGCAGCAAAGTGGAAGCATGCGGCATGCACAAGCATAG
CAGAGGGAGGGTCCTCCCATGAAAACTTGCTGAAGTTTGTGAATTTGCTAAGAGAACAGTAGTGTCTAAGATTGTCAAAA
TTGTTCTGAAAATTGAAAGGTCAGAATTAATCATTGAGGTGCTTTGGCAAATTCATGGGACTGGAAGTATACCTTCTCTT
TTTTTTTTCTGAAAAGTGTAATAGATGAATCACCAGTGCTACTGCTAAATGTAATGCAATATAATAAAAACTACTACCTC
TGTTTTCAAATATAAGCATTTCAGGCTATGCAATGTATAGCCAGAAATGCTTATATTTGCAAACGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2900.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis