Browse Element(s) Details


Os.29810.1.S1_at

Description gb:AK109822.1
DB_XREF= gi:32995031
TID=Os.29810.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29810 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0018C10.34 (P0018C10.34), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-A09, full insert sequence.
FL= gb:AK109822.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6586011/11ANTH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65800Os.35603.1.S1_at11/111+38539707..38543983expressed protein
LOC_Os01g65810OsAffx.11747.2.A1_at11/111+38545985..38547304hypothetical protein
LOC_Os01g65820OsAffx.23929.1.S1_at11/111+38547994..38548583hypothetical protein
LOC_Os01g65830Os.9534.1.S1_at11/111+38551270..38552844Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os01g65840Os.34903.1.S1_at11/111+38553274..38555289pentatricopeptide, putative, expressed
LOC_Os01g65850OsAffx.23930.1.S1_at11/111+38555661..38564077Type III restriction enzyme, res subunit family protein
LOC_Os01g65860Os.29810.1.S1_at11/111+38565328..38567154ANTH domain containing protein, expressed
LOC_Os01g65870OsAffx.2418.1.S1_at9/111+38572676..38573471hypothetical protein
LOC_Os01g65880Os.4655.1.S1_at11/111+38580899..38584499MtN3/saliva family protein, expressed
LOC_Os01g65880Os.51530.1.S1_at11/111+38580899..38584499MtN3/saliva family protein, expressed
LOC_Os01g65890Os.25060.1.S1_at11/111+38584858..38588284DNA repair metallo-beta-lactamase family protein, expressed
LOC_Os01g65900Os.9902.1.S1_at10/111+38588715..38592358GRAS family transcription factor containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29810.1.S1_at--382--5611Chr01:38565868..38565892 (25 bp)
GACAATAGCAGCAAGGCATCGCCAG
LOC_Os01g65860
Os.29810.1.S1_at--330--8591Chr01:38565813..38565837 (25 bp)
TGGTCGACGACCACATGGCCGACTT
LOC_Os01g65860
Os.29810.1.S1_at--584--5951Chr01:38565748..38565772 (25 bp)
GAGCAAGACCGGGATCTGACACTGT
LOC_Os01g65860
Os.29810.1.S1_at--1088--8951Chr01:38565732..38565756 (25 bp)
TGACACTGTCCCTGTTCGGCGATGA
LOC_Os01g65860
Os.29810.1.S1_at--808--10251Chr01:38565676..38565700 (25 bp)
TTTGACGACGACCAATGCGATGACT
LOC_Os01g65860
Os.29810.1.S1_at--1089--3411Chr01:38565607..38565631 (25 bp)
CAGAGCGCGACGGTGCTTGCACTGC
LOC_Os01g65860
Os.29810.1.S1_at--947--9291Chr01:38565518..38565542 (25 bp)
TCCGCCGACGTACGTTCAGATGATG
LOC_Os01g65860
Os.29810.1.S1_at--633--3391Chr01:38565478..38565502 (25 bp)
CAGCGGCTTCTTGCGAACGAGCAGA
LOC_Os01g65860
Os.29810.1.S1_at--380--10631Chr01:38565439..38565463 (25 bp)
TTCGAGACGCAACAAATGGCGGCCT
LOC_Os01g65860
Os.29810.1.S1_at--999--2271Chr01:38565426..38565450 (25 bp)
AAATGGCGGCCTGGAGTTACAGTTC
LOC_Os01g65860
Os.29810.1.S1_at--107--3191Chr01:38565347..38565371 (25 bp)
CAATGCTAACTATGATACACGCTAA
LOC_Os01g65860
Target Sequence 
GACAATAGCAGCAAGGCATCGCCAGCTGAGCCGGCGCCGGCAGGCGCACTCGTCGTGGTCGACGACCACATGGCCGACTT
CCTGAACCTTGGGGAAGAATCGACGCCATTGTCGACGGAGGAGCAAGACCGGGATCTGACACTGTCCCTGTTCGGCGATG
ACCCAGCGACGCCGGCGCCGAAGTGGGAGACGTTTGACGACGACCAATGCGATGACTGGGAGACGGCGCTTGTGCAGTCG
GCGAGCAAGTTCGCCGCCACCCAGAGCGCGACGGTGCTTGCACTGCCACCGCCACCTGGGGCCACCGGCGGCGAGGTCGC
GGACCCGTTCGCGGCGTCGCTGGCCGTGCCTCCGCCGACGTACGTTCAGATGATGGACATGCAGGCGAGGCAGCGGCTTC
TTGCGAACGAGCAGATGATGTGGCAGCAGTTCGAGACGCAACAAATGGCGGCCTGGAGTTACAGTTCATTGTTGTAAGAT
CGTAAAAAACGAAATTAATGTTTTAGAGCGATGAGAAATTTCAATGCTAACTATGATACACGCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29810.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis