Browse Element(s) Details


Os.29907.1.S1_at

Description gb:AK121881.1
DB_XREF= gi:37991504
TID=Os.29907.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29907 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative purine permease (B1144G04.33), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033104L22, full insert sequence.
FL= gb:AK121881.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4880011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48780OsAffx.25095.1.S1_at10/111+28304980..28306407transposon protein, putative, unclassified
LOC_Os01g48780OsAffx.25095.3.S1_x_at1/111+28304980..28306407transposon protein, putative, unclassified
LOC_Os01g48780OsAffx.25095.5.S1_x_at1/111+28304980..28306407transposon protein, putative, unclassified
LOC_Os01g48790Os.9641.1.S1_x_at11/111+28310536..28317230YT521-B-like family protein, expressed
LOC_Os01g48800Os.29907.1.S1_at11/111+28322809..28324394expressed protein
LOC_Os01g48810Os.38817.1.S1_at11/111+28335879..28338709expressed protein
LOC_Os01g48810Os.38817.2.S1_x_at9/111+28335879..28338709expressed protein
LOC_Os01g48810Os.52100.1.S1_at1/111+28335879..28338709expressed protein
LOC_Os01g48820Os.21192.2.S1_at10/111+28339527..28340797expressed protein
LOC_Os01g48820Os.21192.3.S1_x_at9/111+28339527..28340797expressed protein
LOC_Os01g48830Os.31693.2.S1_at11/111+28343118..28348261expressed protein
LOC_Os01g48830Os.31693.4.S1_x_at10/111+28343118..28348261expressed protein
LOC_Os01g48830Os.31693.3.S1_at9/111+28343118..28348261expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006863biological_processpurine transport
GO:0010184biological_processcytokinin transport
GO:0005887cellular_componentintegral to plasma membrane
GO:0005345molecular_functionpurine transporter activity
GO:0015211molecular_functionpurine nucleoside transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29907.1.S1_at--1079--9511Chr01:28323888..28323912 (25 bp)
TCTACGGCGAGTATACCACGCAGAA
LOC_Os01g48800
Os.29907.1.S1_at--273--3231Chr01:28323976..28324000 (25 bp)
CAAGATACCCACAGGTGGCGGCGCG
LOC_Os01g48800
Os.29907.1.S1_at--340--4691Chr01:28323998..28324022 (25 bp)
GCGGCAGAAGGCGACCCAGTACATG
LOC_Os01g48800
Os.29907.1.S1_at--1027--4591Chr01:28324008..28324032 (25 bp)
GCGACCCAGTACATGAAGCCGTTTG
LOC_Os01g48800
Os.29907.1.S1_at--467--651Chr01:28324020..28324044 (25 bp)
ATGAAGCCGTTTGAGCCATCTAACC
LOC_Os01g48800
Os.29907.1.S1_at--941--10251Chr01:28324029..28324053 (25 bp)
TTTGAGCCATCTAACCTTTTCCTTT
LOC_Os01g48800
Os.29907.1.S1_at--1005--2951Chr01:28324117..28324141 (25 bp)
AATGGTAGCAACACTTCAATCTGGT
LOC_Os01g48800
Os.29907.1.S1_at--524--3011Chr01:28324153..28324177 (25 bp)
AATGCATCATGCATGGCGCATAAAC
LOC_Os01g48800
Os.29907.1.S1_at--475--5111Chr01:28324235..28324259 (25 bp)
GCACATTAACAACGTACTGTCCATG
LOC_Os01g48800
Os.29907.1.S1_at--782--6851Chr01:28324294..28324318 (25 bp)
GTTTGGTTTAGGTGGCTACTGCCAC
LOC_Os01g48800
Os.29907.1.S1_at--873--9911Chr01:28324310..28324334 (25 bp)
TACTGCCACTTGCTTGTGCTAAGGT
LOC_Os01g48800
Target Sequence 
TCTACGGCGAGTATACCACGCAGAAGAAGGTGGACGGCGACGGCAAGGTGGCCGCCGCGTCGTCCGCCGCCGCCGCCGCC
TCCGCGGACAAGATACCCACAGGTGGCGGCGCGGCAGAAGGCGACCCAGTACATGAAGCCGTTTGAGCCATCTAACCTTT
TCCTTTCCAGGAAGAAGAAGAAAAAAAAATGTCAAGCGAAGCACATGGAAGAAAAAAAAAAGGGTTTTTCAATGGTAGCA
ACACTTCAATCTGGTGAAGCTGCAGAAATGCATCATGCATGGCGCATAAACTAAAAAACATGCATATATCATGTAAGGCA
CAAGAGACAAATGCTGCATATATTTGTTGCACATTAACAACGTACTGTCCATGAGATATATATGCAGGGTTGGTGGCTGT
GGTTTTGGTTTGGTTTAGGTGGCTACTGCCACTTGCTTGTGCTAAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29907.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis