Browse Element(s) Details


Os.29976.1.S1_at

Description gb:AK109581.1
DB_XREF= gi:32994790
TID=Os.29976.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29976 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1058_A12.11 (OJ1058_A12.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-A05, full insert sequence.
FL= gb:AK109581.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0684011/11expressed protein
LOC_Os07g352004/11hypothetical protein
LOC_Os05g232204/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06800Os.50220.1.S1_at11/118+3785754..3789194retrotransposon protein, putative, unclassified, expressed
LOC_Os08g06810OsAffx.29068.2.S1_at11/118+3794440..3796707hypothetical protein
LOC_Os08g06820Os.35344.3.S1_x_at10/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820OsAffx.22940.1.S1_s_at10/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820OsAffx.22940.5.S1_at9/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820OsAffx.22940.2.S1_s_at9/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820OsAffx.22940.5.S1_x_at8/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820Os.35344.18.S1_x_at8/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820OsAffx.22940.3.S1_x_at7/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820OsAffx.22940.2.S1_at7/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820OsAffx.31552.2.S1_at1/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06830OsAffx.29068.1.S1_at11/118+3809681..3811100hypothetical protein
LOC_Os08g06840Os.29976.1.S1_at11/118+3812742..3813723expressed protein
LOC_Os08g06850NANA8+3817417..3821222retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g06860OsAffx.24469.1.S1_x_at2/118+3822410..3823973retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g06870OsAffx.5727.1.S1_at7/118+3831667..3832508hypothetical protein
LOC_Os08g06880OsAffx.29070.2.S1_at10/118+3832845..3836002expressed protein
LOC_Os08g06880OsAffx.29070.2.S1_x_at10/118+3832845..3836002expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29976.1.S1_at--769--6172Chr07:21073438..21073462 (25 bp)
GAGGAGTCATCCCTATGCGCTCGCG
LOC_Os07g35200
Os.29976.1.S1_at--840--10772Chr07:21073528..21073552 (25 bp)
TTGAGTTCCTCATCCCCAAGCAGCT
LOC_Os07g35200
Os.29976.1.S1_at--760--6152Chr07:21073618..21073642 (25 bp)
GAGGTAGACCTTTGAGCTCGTGCTC
LOC_Os07g35200
Os.29976.1.S1_at--1046--1793Chr07:21073742..21073766 (25 bp)
ACCGCTGCTCTCTGTCTGGGAGGAA
LOC_Os07g35200
Os.29976.1.S1_at--296--2873Chr07:21073806..21073830 (25 bp)
AAGTGGCCACTAACGTGTGGCTCTA
NONE
Os.29976.1.S1_at--688--3733Chr07:21073815..21073839 (25 bp)
CTAACGTGTGGCTCTAATTTTTATT
NONE
Os.29976.1.S1_at--73--6812Chr07:21073844..21073868 (25 bp)
GTTTTATTTGCTGAGTAGACTTCCA
NONE
Os.29976.1.S1_at--640--8892Chr07:21073855..21073879 (25 bp)
TGAGTAGACTTCCACATCATTGCCA
NONE
Os.29976.1.S1_at--210--2071Chr08:3812851..3812875 (25 bp)
ACTTCCACATCATTGCCACATAGAT
LOC_Os08g06840
Os.29976.1.S1_at--758--10692Chr08:3812839..3812863 (25 bp)
TTGCCACATAGATGAAAACCAGCTG
LOC_Os08g06840
Os.29976.1.S1_at--345--2653Chr07:5788701..5788756 (25 bp)
AACCAGCTGAAAAACCACTTGAGGG
NONE
Target Sequence 
GAGGAGTCATCCCTATGCGCTCGCGCCGCCACCGCTTGGTCGAGGACGAGGTCGAGCTCAAGCTCTACATCCGCCGCCGC
CTCGTNGAGNCTTGAGTTCCTCATCCCCAAGCAGCTCGAGTTCCACCGGCGAGCTCGAACATGGAGAAGATGGAGTTATG
GAGCTCCTGGAGCCGGCAGNAGAGGTAGACCTTTGAGCTCGTGCTCGCCGGCGGTCGGCACGGAAGGGAAGGCTGGGGAT
GTGCTTGAGCTCCGTCGCCGCAACGAGTCCCCTGCTCCANGGCCACCGATCTCCTGCTCAGCTCCACCGCTGCTCTCTGT
CTGGGAGGAAGAAGGATAGAGAAAGAAAGGGAAGAGGAGATGGGGGAAGAAGTGGCCACTAACGTGTGGCTCTAATTTTT
ATTTTTAGTTTTATTTGCTGAGTAGACTTCCACATCATTGCCACATAGATGAAAACCAGCTGAAAAACCACTTGAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29976.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis