Browse Element(s) Details


Os.30016.1.S1_at

Description gb:AK109514.1
DB_XREF= gi:32994723
TID=Os.30016.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30016 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-105-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-A05, full insert sequence.
FL= gb:AK109514.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2372011/11Glycosyl hydrolases family 17 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23680Os.14860.1.S1_at11/118+14188455..14195291FHA domain containing protein, expressed
LOC_Os08g23690OsAffx.17116.1.S1_at11/118+14195712..14196149hypothetical protein
LOC_Os08g23700Os.53734.1.S1_at10/118+14198165..14205514transposon protein, putative, Mutator sub-class, expressed
LOC_Os08g23710Os.4696.1.S1_at11/118+14207673..1421009760S ribosomal protein L7a, putative, expressed
LOC_Os08g23720Os.30016.1.S1_at11/118+14216532..14221737Glycosyl hydrolases family 17 protein, expressed
LOC_Os08g23730Os.15669.1.S1_at11/118+14224138..14227984GMP synthase, putative, expressed
LOC_Os08g23740OsAffx.17117.1.S1_at11/118+14229835..14233602subtilisin-like protease, putative, expressed
LOC_Os08g23740OsAffx.17117.1.S1_x_at11/118+14229835..14233602subtilisin-like protease, putative, expressed
LOC_Os08g23750OsAffx.29320.1.S1_at11/118+14234271..14234814hypothetical protein
LOC_Os08g23754Os.50306.1.S1_at11/118+14239722..14244173expressed protein
LOC_Os08g23754Os.47870.1.S1_at10/118+14239722..14244173expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30016.1.S1_at--246--5691Chr08:14221161..14221185 (25 bp)
GACTTGGCATGATCACTTACCTTGA
LOC_Os08g23720
Os.30016.1.S1_at--520--1991Chr08:14221200..14221224 (25 bp)
ACTGCCGCTTTCTTGTTGGTATAGA
LOC_Os08g23720
Os.30016.1.S1_at--1132--7951Chr08:14221287..14221311 (25 bp)
GGATCTTGGCGTTCTTGGTAATTGG
LOC_Os08g23720
Os.30016.1.S1_at--1054--1131Chr08:14221354..14221378 (25 bp)
AGTCGACTTTAAACAGCTCCCTTGG
LOC_Os08g23720
Os.30016.1.S1_at--622--4331Chr08:14221388..14221412 (25 bp)
CCATGTCCTTGTGAAGTAGCTTCGT
LOC_Os08g23720
Os.30016.1.S1_at--517--4911Chr08:14221406..14221430 (25 bp)
GCTTCGTCAATTGGTGGCTTCTAGA
LOC_Os08g23720
Os.30016.1.S1_at--563--5151Chr08:14221503..14221527 (25 bp)
GCAACTTCCGATCTTCATGCTAAGG
LOC_Os08g23720
Os.30016.1.S1_at--409--7711Chr08:14221526..14221550 (25 bp)
GGTGGCCAAAAGCTTTCTCTAGATT
LOC_Os08g23720
Os.30016.1.S1_at--916--8811Chr08:14221568..14221592 (25 bp)
TGTTGTTGCAACCTGATTCTGCCAT
LOC_Os08g23720
Os.30016.1.S1_at--357--10571Chr08:14221584..14221608 (25 bp)
TTCTGCCATTCTTTGGTACCACCAT
LOC_Os08g23720
Os.30016.1.S1_at--421--8311Chr08:14221652..14221676 (25 bp)
GGCTATGGTATTGCTGTGGTCTTAA
LOC_Os08g23720
Target Sequence 
GACTTGGCATGATCACTTACCTTGACCCATCNATCGGTGACTGCCGCTTTCTTGTTGGTATAGATGACAGTAGAACATCT
ACAATCTATTCTTCAGGTGACTGTTCTCNGAGGCGCTTTGGATTGTGGATCTTGGCGTTCTTGGTAATTGGGTTCCTTCA
GATTGGGGTTTATTTGTGATTTTGGTTGTCGAGAGTCGACTTTAAACAGCTCCCTTGGGCACACTTNCCATGTCCTTGTG
AAGTAGCTTCGTCAATTGGTGGCTTCTAGATGTAGGAAAGGGGGGACACTGNTAGATGTACATGATCACTAGCTTGNTCT
TGGGNATTGNGCTGNCCAANTCTGCAACTTCCGATCTTCATGCTAAGGTGGCCAAAAGCTTTCTCTAGATTGAAATGAAG
ATGGTAGATGTTGTTGCAACCTGATTCTGCCATTCTTTGGTACCACCATTTTGATTTGGGGCGAATATATTTCTTTTGTA
GGGGGTATATGAGGCTATGGTATTGCTGTGGTCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30016.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis