Browse Element(s) Details


Os.30588.1.S1_at

Description gb:AK120975.1
DB_XREF= gi:37990598
TID=Os.30588.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30588 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0529E05.18 (P0529E05.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023041K02, full insert sequence.
FL= gb:AK120975.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6344411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63400Os.32279.4.S1_x_at11/111+37059685..37064252pentatricopeptide, putative, expressed
LOC_Os01g63400Os.32279.2.S1_x_at11/111+37059685..37064252pentatricopeptide, putative, expressed
LOC_Os01g63410Os.32279.1.S1_at11/111+37062800..37064056expressed protein
LOC_Os01g63420Os.11384.1.S1_at11/111+37073656..37077825Coronatine-insensitive protein 1, putative, expressed
LOC_Os01g63430OsAffx.11713.3.S1_at11/111+37077786..37080821hypothetical protein
LOC_Os01g63430OsAffx.11713.1.S1_at11/111+37077786..37080821hypothetical protein
LOC_Os01g63430Os.10263.1.S1_at10/111+37077786..37080821hypothetical protein
LOC_Os01g63444Os.30588.4.S1_x_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.4.S1_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.1.S1_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.5.S1_x_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.2.S1_x_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.3.S1_x_at10/111+37083746..37089766expressed protein
LOC_Os01g63460Os.42406.1.S1_at11/111+37090476..37092143myb family transcription factor, putative, expressed
LOC_Os01g63470Os.17214.1.S1_at11/111+37097867..37099284C2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30588.1.S1_at--720--7151Chr01:37089238..37089262 (25 bp)
GTCTAGTTTTCAGGTCAGCTTTCCA
LOC_Os01g63444
Os.30588.1.S1_at--966--91Chr01:37089292..37089316 (25 bp)
ATTCGCCGGCGCAGTCTATTATAAT
LOC_Os01g63444
Os.30588.1.S1_at--920--9731Chr01:37089313..37089337 (25 bp)
TAATCCGGTTAATGCGATCTCTGGC
LOC_Os01g63444
Os.30588.1.S1_at--535--3471Chr01:37089433..37089457 (25 bp)
CAGGTGATGCCTTAACGCGTGACGT
LOC_Os01g63444
Os.30588.1.S1_at--963--8891Chr01:37089487..37089511 (25 bp)
TGAGTCCCCTGCGAGAGCTGAGTCA
LOC_Os01g63444
Os.30588.1.S1_at--838--6091Chr01:37089506..37089530 (25 bp)
GAGTCAGATACCACGCGATGCAACA
LOC_Os01g63444
Os.30588.1.S1_at--864--2871Chr01:37089536..37089560 (25 bp)
AAGTGGCATTGAGCCGCTGACACAC
LOC_Os01g63444
Os.30588.1.S1_at--660--10411Chr01:37089565..37089589 (25 bp)
TTATCTCCGGTCTGTGATCTCCTAT
LOC_Os01g63444
Os.30588.1.S1_at--306--10211Chr01:37089587..37089611 (25 bp)
TATTTCACCATGCATTCGGTCGGGA
LOC_Os01g63444
Os.30588.1.S1_at--736--3931Chr01:37089626..37089650 (25 bp)
CGGCGTCGGCGTTGAGATACACTGA
LOC_Os01g63444
Os.30588.1.S1_at--51--1151Chr01:37089724..37089748 (25 bp)
AGTCGCATCGATCAAGCAGAGCCTT
LOC_Os01g63444
Target Sequence 
GTCTAGTTTTCAGGTCAGCTTTCCACGCTCTGTCGTGGCCGGGCGAGACACCCCATTCGCCGGCGCAGTCTATTATAATC
CGGTTAATGCGATCTCTGGCACTGAAACTGGACTCGCCTGAAAGTTGAAACTGCGCAAAAGAGCAGCAGACGATGACTCG
TGAAGGAGAAAGCGGAGAGTGGTCACCGGTCAGGTCAGGTGATGCCTTAACGCGTGACGTGACCGAACTGGAATTTCCCG
ACGAAGAGCTGAGTCCCCTGCGAGAGCTGAGTCAGATACCACGCGATGCAACAGAGCAAAGTGGCATTGAGCCGCTGACA
CACTCACTTATCTCCGGTCTGTGATCTCCTATTTCACCATGCATTCGGTCGGGAATCGGGATCGCCGACGGCGTCGGCGT
TGAGATACACTGACCTCCGGCTGAGGCTGGTCGGTGCGGCTTGCCGAACAAACAATCAAGTGAAAGATTCATGCAGTGAA
TTGTATAGTCGCATCGATCAAGCAGAGCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30588.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis