Browse Element(s) Details


Os.30600.1.S1_at

Description gb:AK108609.1
DB_XREF= gi:32993818
TID=Os.30600.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30600 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-A04, full insert sequence.
FL= gb:AK120030.1 gb:AK108609.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g504349/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50390Os.56966.1.S1_at11/115+28797244..28798104expressed protein
LOC_Os05g50400OsAffx.15180.1.S1_at11/115+28800293..28801144hypothetical protein
LOC_Os05g50410Os.33045.1.S1_a_at11/115+28806350..28813611N terminus of Rad21/Rec8 like protein, expressed
LOC_Os05g50420OsAffx.27394.1.S1_at11/115+28814347..28815271expressed protein
LOC_Os05g50430NANA5+28817972..28820080hypothetical protein
LOC_Os05g50434Os.30600.1.S2_at11/115+28821418..28828923expressed protein
LOC_Os05g50434Os.51503.1.S1_at11/115+28821418..28828923expressed protein
LOC_Os05g50434Os.30600.1.S1_at9/115+28821418..28828923expressed protein
LOC_Os05g50440NANA5+28829227..28835788expressed protein
LOC_Os05g50450OsAffx.4676.1.S1_s_at11/115+28836696..28838054hypothetical protein
LOC_Os05g50460OsAffx.15181.1.S1_at11/115+28840853..28842757pentatricopeptide, putative
LOC_Os05g50470Os.55486.1.S1_at11/115+28850020..28851335expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30600.1.S1_at--803--2111Chr05:28828573..28828597 (25 bp)
ACATGTCTAGGCGTTTCTTGTTTCA
LOC_Os05g50434
Os.30600.1.S1_at--728--1131Chr05:28828539..28828563 (25 bp)
AGTGCTGTCCGGATCGATGCCTAAT
LOC_Os05g50434
Os.30600.1.S1_at--272--971Chr05:28828405..28828429 (25 bp)
AGGAGACGTTTCTGCTATCCACGAT
LOC_Os05g50434
Os.30600.1.S1_at--481--6511Chr05:28828370..28828394 (25 bp)
GTTTTAGCACGGTGCTTCCCAATTA
LOC_Os05g50434
Os.30600.1.S1_at--956--10651NONE
TTCCTGTCTCTCAAGCAAAGTGCCT
NONE
Os.30600.1.S1_at--579--9011Chr05:28828060..28828084 (25 bp)
TGAATTCTATTCAAAGCCCTCACGC
LOC_Os05g50434
Os.30600.1.S1_at--746--3172Chr05:29064226..29064250 (25 bp)
CAATTGGTGTGGTTCCTTTTGCCAG
NONE
Os.30600.1.S1_at--161--4492Chr05:29064250..29064274 (25 bp)
GCCGGACTTTCTTCTCTTATACAAA
NONE
Os.30600.1.S1_at--1079--1752Chr05:29064283..29064307 (25 bp)
ACCTGCCTTCTCTGGGTGAAACCAA
NONE
Os.30600.1.S1_at--1125--131NONE
ATTAAAGCGTTTGCCTTGCTAAGCA
NONE
Os.30600.1.S1_at--587--2091Chr05:28822405..28822429 (25 bp)
ACATCCATTATGTTCATCCTACCAT
LOC_Os05g50434
Target Sequence 
ACATGTCTAGGCGTTTCTTGTTTCAGAAATTTTCAGTGCTGTCCGGATCGATGCCTAATCGTCCTACCTCCGCTCAAGGA
GGAGACGTTTCTGCTATCCACGATGCTCTCCGTCGTTTTAGCACGGTGCTTCCCAATTACCATGGCCTTCCTGTCTCTCA
AGCAAAGTGCCTGAATTCTATTCAAAGCCCTCACGCAGCCACCAAATTAAACCACCCAACAATTGGTGTGGTTCCTTTTG
CCAGCCGGACTTTCTTCTCTTATACAAAACCCTACCACCTGCCTTCTCTGGGTGAAACCAATTACCCTGATTATGTAGCA
GCAGACATTAAAGCGTTTGCCTTGCTAAGCAAAGCCTAAAACTCTACCAATGTTAAGTGAAGGGAAGGAGCTAAATATGA
AGGTAAACAATAAGGAAGTAGCATTATTTACTGGGACACAGTATAGTTTACAGATGATTCTTCTTTTTGTCTGTAATACA
TCCATTATGTTCATCCTACCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30600.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis