Browse Element(s) Details


Os.31088.1.S1_at

Description gb:AK107858.1
DB_XREF= gi:32993067
TID=Os.31088.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31088 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0560B06.28 (P0560B06.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-B04, full insert sequence.
FL= gb:AK107858.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2691211/11Glutaredoxin-like family protein, expressed
LOC_Os01g271402/11Glutaredoxin-like family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26888NANA1+15279322..15281667retrotransposon protein, putative, unclassified
LOC_Os01g26892NANA1+15283424..15285631retrotransposon protein, putative, unclassified
LOC_Os01g26896OsAffx.11220.1.S1_at8/111+15289466..15290503hypothetical protein
LOC_Os01g26896OsAffx.11219.1.S1_at7/111+15289466..15290503hypothetical protein
LOC_Os01g26900OsAffx.23412.1.S1_at9/111+15297132..15298228hypothetical protein
LOC_Os01g26900OsAffx.23412.1.S1_x_at9/111+15297132..15298228hypothetical protein
LOC_Os01g26900OsAffx.23412.2.S1_at7/111+15297132..15298228hypothetical protein
LOC_Os01g26904Os.35465.1.S1_at8/111+15300090..15302365hypothetical protein
LOC_Os01g26908OsAffx.23413.2.S1_at9/111+15304168..15304481hypothetical protein
LOC_Os01g26908OsAffx.23413.1.S1_x_at1/111+15304168..15304481hypothetical protein
LOC_Os01g26912Os.31088.1.S1_at11/111+15305984..15306749Glutaredoxin-like family protein, expressed
LOC_Os01g26916Os.35344.3.S1_x_at9/111+15308969..15311664Transposable element protein, putative, MuDR
LOC_Os01g26916Os.35344.18.S1_x_at9/111+15308969..15311664Transposable element protein, putative, MuDR
LOC_Os01g26916OsAffx.22940.5.S1_x_at3/111+15308969..15311664Transposable element protein, putative, MuDR
LOC_Os01g26920Os.12845.1.S1_at5/111+15320356..15324971expressed protein
LOC_Os01g26920Os.34167.2.S1_x_at1/111+15320356..15324971expressed protein
LOC_Os01g26930OsAffx.8908.1.S1_at11/111+15327347..15331899transposon protein, putative, Mutator sub-class
LOC_Os01g26930OsAffx.8908.1.S1_x_at11/111+15327347..15331899transposon protein, putative, Mutator sub-class
LOC_Os01g26930OsAffx.19407.1.S1_at1/111+15327347..15331899transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0008794molecular_functionarsenate reductase (glutaredoxin) activity
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31088.1.S1_at--348--2232Chr01:15451916..15451940 (25 bp)
ACAAGGTCATGTCGCTGCACCTCAG
LOC_Os01g27140
Os.31088.1.S1_at--659--10512Chr01:15451961..15451985 (25 bp)
TTCGCAATGCGGGTGCCCTCTGGGT
LOC_Os01g27140
Os.31088.1.S1_at--631--7752Chr01:15451983..15452007 (25 bp)
GGTGTAGCACCAACGACGCAACTAT
NONE
Os.31088.1.S1_at--145--5152Chr01:15452000..15452024 (25 bp)
GCAACTATACCTACCAGCGACTGGT
NONE
Os.31088.1.S1_at--648--3372Chr01:15452014..15452038 (25 bp)
CAGCGACTGGTTCTTGATTTGGACT
NONE
Os.31088.1.S1_at--1092--212Chr01:15452030..15452054 (25 bp)
ATTTGGACTGATACCGTGGCGCAGA
NONE
Os.31088.1.S1_at--177--3972Chr01:15452066..15452090 (25 bp)
CGGGTACTTTGGTTTGTATCAGGCA
NONE
Os.31088.1.S1_at--214--6892Chr01:15452081..15452105 (25 bp)
GTATCAGGCAGGTCAGGTATATCTA
NONE
Os.31088.1.S1_at--383--332Chr01:15452113..15452137 (25 bp)
ATAAATAGTACGTGCAGGCCTTTTT
NONE
Os.31088.1.S1_at--464--132Chr01:15452175..15452199 (25 bp)
ATTAAGTGTGTCATGTCAGCCGCCT
NONE
Os.31088.1.S1_at--657--1672Chr01:15452192..15452216 (25 bp)
AGCCGCCTGTAAGGCTCTTTTGAGA
NONE
Target Sequence 
ACAAGGTCATGTCGCTGCACCTCAGCGGCAACCTTGTCCCGCTGCTTCGCAATGCGGGTGCCCTCTGGGTGTAGCACCAA
CGACGCAACTATACCTACCAGCGACTGGTTCTTGATTTGGACTGATACCGTGGCGCAGAATAATTTTATACGGGTACTTT
GGTTTGTATCAGGCAGGTCAGGTATATCTAAGGGAAAATAAATAGTACGTGCAGGCCTTTTTNGCACTGCAATACTAGTA
AATCTATAGAGAGTGGGGAATTAAGTGTGTCATGTCAGCCGCCTGTAAGGCTCTTTTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31088.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis