Browse Element(s) Details


Os.31094.1.S1_at

Description gb:AK107848.1
DB_XREF= gi:32993057
TID=Os.31094.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31094 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-A06, full insert sequence.
FL= gb:AK107848.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g350509/11Ctr copper transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34980Os.11846.1.S1_at11/115+20695884..20698097amino acid carrier, putative, expressed
LOC_Os05g34990OsAffx.27170.1.S1_at11/115+20704991..20705565hypothetical protein
LOC_Os05g35000OsAffx.27171.1.S1_at11/115+20707159..20708951hypothetical protein
LOC_Os05g35000OsAffx.17306.1.S1_x_at1/115+20707159..20708951hypothetical protein
LOC_Os05g35010Os.50386.1.S1_at11/115+20709347..20711181Cytochrome P450 family protein, expressed
LOC_Os05g35020OsAffx.27172.1.S1_at11/115+20713010..20713960hypothetical protein
LOC_Os05g35030OsAffx.14966.1.S1_at11/115+20716638..20717135hypothetical protein
LOC_Os05g35030OsAffx.22005.1.S1_x_at1/115+20716638..20717135hypothetical protein
LOC_Os05g35040OsAffx.14967.1.S1_at11/115+20719279..20719603hypothetical protein
LOC_Os05g35050Os.31094.1.S1_at9/115+20720832..20721704Ctr copper transporter family protein, expressed
LOC_Os05g35060Os.50400.1.S1_at11/115+20723871..20728032Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os05g35070OsAffx.14968.1.S1_at11/115+20733836..20737594hypothetical protein
LOC_Os05g35080NANA5+20745363..20746099hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006825biological_processcopper ion transport
GO:0015678biological_processhigh affinity copper ion transport
GO:0048234biological_processmale gamete generation (sensu Magnoliophyta)
GO:0048364biological_processroot development
GO:0016020cellular_componentmembrane
GO:0005375molecular_functioncopper ion transporter activity
GO:0015089molecular_functionhigh affinity copper ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31094.1.S1_at--490--4191Chr05:20721347..20721371 (25 bp)
CCCGTGTGCTGCTAGTATGGCTTAA
LOC_Os05g35050
Os.31094.1.S1_at--181--6931Chr05:20721361..20721385 (25 bp)
GTATGGCTTAAGCTGTCTCGCTCGT
LOC_Os05g35050
Os.31094.1.S1_at--428--9511Chr05:20721376..20721400 (25 bp)
TCTCGCTCGTCATGGTGTTCACGTG
LOC_Os05g35050
Os.31094.1.S1_at--1100--7531Chr05:20721398..20721422 (25 bp)
GTGGCCTTTTCGCTTAATTTGTTGA
LOC_Os05g35050
Os.31094.1.S1_at--486--7291NONE
GTGCGCATATAGGTTTCAGGTGATT
NONE
Os.31094.1.S1_at--690--6811Chr05:20721506..20721530 (25 bp)
GTTTTTCTCTCGTAAGGTCTACAGA
LOC_Os05g35050
Os.31094.1.S1_at--664--7131Chr05:20721557..20721581 (25 bp)
GTCATCTTGGCTTGGAATCTATTAC
LOC_Os05g35050
Os.31094.1.S1_at--223--451Chr05:20721573..20721597 (25 bp)
ATCTATTACTAGTGGTGTCTGTCAA
LOC_Os05g35050
Os.31094.1.S1_at--456--6891Chr05:20721607..20721631 (25 bp)
GTATAGCATATGTCACTCATTTGAT
LOC_Os05g35050
Os.31094.1.S1_at--607--3791Chr05:20721641..20721665 (25 bp)
CTCCCGGCTTTAGTTTCAATTGTCT
LOC_Os05g35050
Os.31094.1.S1_at--1106--7431Chr05:20721682..20721706 (25 bp)
GTGTACCTGCAAAACTGTTCTTCAA
NONE
Target Sequence 
CCCGTGTGCTGCTAGTATGGCTTAAGCTGTCTCGCTCGTCATGGTGTTCACGTGGCCTTTTCGCTTAATTTGTTGATGTT
TTGTGTGTGCGCATATAGGTTTCAGGTGATTGAAATCTTTGAAATTTGGGTCGGATGATCGAGTTTGTTTGGTTGTTTTG
TTTTTCTCTCGTAAGGTCTACAGATGTGACATGAAAGTTAATTTCTTGATGTCATCTTGGCTTGGAATCTATTACTAGTG
GTGTCTGTCAAACTGTAATTGTATAGCATATGTCACTCATTTGATTGATGCTGCCTCCCGGCTTTAGTTTCAATTGTCTC
AGATTGGTTATTATAGTGTACCTGCAAAACTGTTCTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31094.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis