Browse Element(s) Details


Os.31112.3.S1_at

Description gb:AK063029.1
DB_XREF= gi:32973047
TID=Os.31112.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31112 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1714_H10.43 (OJ1714_H10.43), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-C02, full insert sequence.
FL= gb:AK063029.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0682010/11RIO1 family protein, expressed
LOC_Os11g118901/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06760OsAffx.28312.2.S1_at11/117+3299802..3300365VQ motif family protein
LOC_Os07g06760OsAffx.28314.1.S1_x_at2/117+3299802..3300365VQ motif family protein
LOC_Os07g06770OsAffx.28313.2.S1_s_at11/117+3305087..3306718expressed protein
LOC_Os07g06780NANA7+3307407..3311111transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g06790OsAffx.28314.1.S1_x_at11/117+3311764..3312297VQ motif family protein, expressed
LOC_Os07g06800OsAffx.16129.1.S1_at10/117+3314786..33164703-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed
LOC_Os07g06810OsAffx.22471.1.S1_x_at11/117+3317638..3320290hypothetical protein
LOC_Os07g06820Os.17949.1.S1_a_at11/117+3322061..3328234RIO1 family protein, expressed
LOC_Os07g06820Os.31112.3.S1_x_at10/117+3322061..3328234RIO1 family protein, expressed
LOC_Os07g06820Os.31112.3.S1_at10/117+3322061..3328234RIO1 family protein, expressed
LOC_Os07g06820OsAffx.18607.1.S1_x_at3/117+3322061..3328234RIO1 family protein, expressed
LOC_Os07g06830Os.16540.1.S1_at11/117+3331186..3332575alpha/beta hydrolase fold family protein, putative, expressed
LOC_Os07g06840Os.17690.1.S1_at11/117+3340497..3341896PrMC3, putative, expressed
LOC_Os07g06850Os.27810.1.S1_at11/117+3343080..3344851PrMC3, putative, expressed
LOC_Os07g06860Os.28983.1.S1_at11/117+3349432..3350972PrMC3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31112.3.S1_at--980--5614Chr11:24633188..24633212 (25 bp)
GACAACACAGTGAGTGACTAAATCT
NONE
Os.31112.3.S1_at--1019--7373Chr11:24633197..24633221 (25 bp)
GTGAGTGACTAAATCTGTACATGCA
NONE
Os.31112.3.S1_at--826--2273Chr11:24633207..24633231 (25 bp)
AAATCTGTACATGCACAAAATTTGA
NONE
Os.31112.3.S1_at--474--5334Chr11:24633243..24633267 (25 bp)
GAAGATTTTAGGATTGGGAGCTGCA
NONE
Os.31112.3.S1_at--61--5513Chr11:24633310..24633334 (25 bp)
GAAAATTTTAGGATTGGGAGCTGCA
NONE
Os.31112.3.S1_at--326--7391Chr10:22343954..22343978 (25 bp)
GTGAGAATGTACTTGCTTGCTTAGT
NONE
Os.31112.3.S1_at--668--3634Chr11:24633359..24633383 (25 bp)
CTTGCTTGCTTAGTTTGTAGTGGTC
NONE
Os.31112.3.S1_at--399--3635Chr11:24633367..24633391 (25 bp)
CTTAGTTTGTAGTGGTCTAGTGGAC
NONE
Os.31112.3.S1_at--345--9273Chr11:24633382..24633406 (25 bp)
TCTAGTGGACACTGGACGGTAGTTC
NONE
Os.31112.3.S1_at--811--5633Chr11:24633389..24633413 (25 bp)
GACACTGGACGGTAGTTCATAGTTC
NONE
Os.31112.3.S1_at--982--3893Chr11:24633393..24633417 (25 bp)
CTGGACGGTAGTTCATAGTTCATAC
NONE
Target Sequence 
GACAACACAGTGAGTGACTAAATCTGTACATGCACAAAATTTGAATAAATGTAGTGAAGATTTTAGGATTGGGAGCTGCA
ATTCACTGATTTAGTGAGTACACAAATTTGAATAAATGTAGTGAAAATTTTAGGATTGGGAGCTGCAATTCACTGATTTA
GTGAGAATGTACTTGCTTGCTTAGTTTGTAGTGGTCTAGTGGACACTGGACGGTAGTTCATAGTTCATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31112.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis