Browse Element(s) Details


Os.31272.1.S1_a_at

Description gb:AK107599.1
DB_XREF= gi:32992808
TID=Os.31272.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31272 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative microtubule associated protein (B1148D12.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-131-B03, full insert sequence.
FL= gb:AK121331.1 gb:AK107599.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6004011/11microtubule bundling polypeptide TMBP200, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59980Os.13253.1.S1_at11/111+35004885..35009062Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os01g59990Os.4678.1.S1_at11/111+35009369..3501222660S ribosomal protein L24, putative, expressed
LOC_Os01g60000Os.18605.1.S1_s_at11/111+35012587..35016401pentatricopeptide, putative, expressed
LOC_Os01g60000OsAffx.23864.1.S1_at11/111+35012587..35016401pentatricopeptide, putative, expressed
LOC_Os01g60010OsAffx.23865.1.S1_at11/111+35016718..35018366pentatricopeptide, putative, expressed
LOC_Os01g60020Os.4384.1.S1_at11/111+35019726..35021240No apical meristem protein, expressed
LOC_Os01g60040Os.31272.1.S2_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed
LOC_Os01g60040Os.31272.2.S1_x_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed
LOC_Os01g60040Os.31272.1.S1_a_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed
LOC_Os01g60040Os.31272.1.S2_a_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed
LOC_Os01g60050OsAffx.23866.1.S1_at11/111+35058059..35062051microtubule bundling polypeptide TMBP200, putative
LOC_Os01g60060OsAffx.21650.1.S1_x_at11/111+35065597..35070720Protein kinase domain containing protein, expressed
LOC_Os01g60070OsAffx.23867.1.S1_at11/111+35072467..35072676hypothetical protein
LOC_Os01g60080Os.12300.1.S1_at11/111+35073709..35076363L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os01g60080OsAffx.27264.1.S1_s_at2/111+35073709..35076363L-ascorbate oxidase homolog precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000226biological_processmicrotubule cytoskeleton organization and biogenesis
GO:0000910biological_processcytokinesis
GO:0009920biological_processcell plate formation (sensu Magnoliophyta)
GO:0005819cellular_componentspindle
GO:0005874cellular_componentmicrotubule
GO:0009524cellular_componentphragmoplast
GO:0009574cellular_componentpreprophase band
GO:0030981cellular_componentcortical microtubule cytoskeleton
GO:0008017molecular_functionmicrotubule binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31272.1.S1_a_at--1122--3631Chr01:35047141..35047165 (25 bp)
CTTCCTGAGCTGTTTGATCATCCAG
LOC_Os01g60040
Os.31272.1.S1_a_at--398--5251Chr01:35046876..35046900 (25 bp)
GAATCGCTAAGCCAACTCGCAAGAT
LOC_Os01g60040
Os.31272.1.S1_a_at--157--1331Chr01:35045697..35045721 (25 bp)
AGAGGCAGCAGGCACTAACAATTCT
LOC_Os01g60040
Os.31272.1.S1_a_at--751--2791Chr01:35045592..35045695 (25 bp)
AAGAGGCAGTGCCAGAGGCCCCTAT
LOC_Os01g60040
Os.31272.1.S1_a_at--37--6231Chr01:35045578..35045599 (22 bp)
GAGGCCCCTATGGAGATCGATGAAT
LOC_Os01g60040
Os.31272.1.S1_a_at--736--71Chr01:35045317..35045341 (25 bp)
ATTGCTCCCGGTGATTTTCATGAAA
LOC_Os01g60040
Os.31272.1.S1_a_at--503--5591Chr01:35045297..35045320 (24 bp)
GAAATCTGCCGAACACTCAAGAAGC
LOC_Os01g60040
Os.31272.1.S1_a_at--222--3751Chr01:35045110..35045305 (25 bp)
CTCAAGAAGCTTATTACCGATGTCA
LOC_Os01g60040
Os.31272.1.S1_a_at--589--1791Chr01:35045095..35045119 (25 bp)
ACCGATGTCAATTTGGCTGTTTCAG
LOC_Os01g60040
Os.31272.1.S1_a_at--505--8331Chr01:35045081..35045105 (25 bp)
GGCTGTTTCAGTGGAAGCTACTCAA
LOC_Os01g60040
Os.31272.1.S1_a_at--875--10591Chr01:35045018..35045042 (25 bp)
TTCTGGAAATTCACGGGTTCTGCTT
LOC_Os01g60040
Target Sequence 
CTTCCTGAGCTGTTTGATCATCCAGATCAGAATGTTCGGGCTTCATCCAAGGGTTTGACACTTGAGCTTTGTCGGTGGAT
TGGCAAAGAGCCTGTAAAGGCAATTTTATTTGAGAAGATGAGAGATACAATGAAAAAAGAATTGGAAGCAGAGCTAGCAA
ATGTCTCAGGAATCGCTAAGCCAACTCGCAAGATAAGATCCGAACAAGAAAAGGAACTTGAGGAGGAAGTTGTGCCAGAG
GCAGCAGGCACTAACAATTCTGAAGAGGCAGTGCCAGAGGCCCCTATGGAGATCGATGAATACGATCTTGTTGATCCTGT
TGATATCTTAACACCACTTGAGAAGTCTGGATTTTGGGATGGTGTGAAAGCTACCAAGTGGTCTGAAAGAAGGGATGCTG
TTGCNGAGCTAACCAAACTTGCTTCAACCAAAAAAATTGCTCCCGGTGATTTTCATGAAATCTGCCGAACACTCAAGAAG
CTTATTACCGATGTCAATTTGGCTGTTTCAGTGGAAGCTACTCAAGCAATAGGAAATTTAGCTAAAGGTTTAAGAACTCA
TTTTTCTGGAAATTCACGGGTTCTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31272.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis