Browse Element(s) Details


Os.31460.1.S1_at

Description gb:NM_185920.1
DB_XREF= gi:34898925
GEN=P0503D09.33
TID=Os.31460.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.31460 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein, similar to Oryza sativa chromosome 1, P0516D04.27 (P0503D09.33), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein, similar to Oryza sativa chromosome 1, P0516D04.27 (P0503D09.33), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4533011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45290OsAffx.22543.1.S1_at11/117+27017550..27021823Cytochrome P450 family protein, expressed
LOC_Os07g45290OsAffx.22543.1.S1_x_at11/117+27017550..27021823Cytochrome P450 family protein, expressed
LOC_Os07g45300OsAffx.10304.1.S1_s_at11/117+27027894..27033398Tim44-like domain containing protein, expressed
LOC_Os07g45300OsAffx.10304.2.S1_at10/117+27027894..27033398Tim44-like domain containing protein, expressed
LOC_Os07g45310Os.17884.1.S1_at11/117+27035300..27036972BSD domain containing protein, expressed
LOC_Os07g45320Os.7852.2.S1_s_at11/117+27038510..27039940expressed protein
LOC_Os07g45320OsAffx.28914.1.S1_at10/117+27038510..27039940expressed protein
LOC_Os07g45320Os.7852.2.S1_at5/117+27038510..27039940expressed protein
LOC_Os07g45330Os.31460.1.S1_at11/117+27042532..27044452expressed protein
LOC_Os07g45330Os.55007.1.S1_x_at7/117+27042532..27044452expressed protein
LOC_Os07g45340OsAffx.28915.1.S1_at11/117+27047094..27048398hypothetical protein
LOC_Os07g45350Os.5183.2.S1_at11/117+27049024..27053091expressed protein
LOC_Os07g45350Os.5183.1.S1_x_at11/117+27049024..27053091expressed protein
LOC_Os07g45360Os.11258.1.S1_at11/117+27053648..27057948Type III restriction enzyme, res subunit family protein, expressed
LOC_Os07g45360Os.11258.1.S2_at10/117+27053648..27057948Type III restriction enzyme, res subunit family protein, expressed
LOC_Os07g45370Os.28679.1.S1_at10/117+27056913..27060589expressed protein
LOC_Os07g45390Os.32101.2.S1_at11/117+27062213..27065707hypothetical protein
LOC_Os07g45400Os.36973.1.S1_at11/117+27068287..27081782expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31460.1.S1_at--994--9231Chr07:27043108..27043132 (25 bp)
TCCTTCTCCAAGGATGCTTAAGGAT
LOC_Os07g45330
Os.31460.1.S1_at--839--4891Chr07:27043093..27043117 (25 bp)
GCTTAAGGATGTGCATAGCCACTTT
LOC_Os07g45330
Os.31460.1.S1_at--315--7331Chr07:27043083..27043107 (25 bp)
GTGCATAGCCACTTTCAGAGTTCCA
LOC_Os07g45330
Os.31460.1.S1_at--208--1691Chr07:27043077..27043101 (25 bp)
AGCCACTTTCAGAGTTCCATTCAAC
LOC_Os07g45330
Os.31460.1.S1_at--32--6071Chr07:27043066..27043090 (25 bp)
GAGTTCCATTCAACATGTCAGCACC
LOC_Os07g45330
Os.31460.1.S1_at--758--6691Chr07:27043064..27043088 (25 bp)
GTTCCATTCAACATGTCAGCACCAT
LOC_Os07g45330
Os.31460.1.S1_at--704--2271Chr07:27042605..27042629 (25 bp)
AAATGCTCAACGGTATGTTACGCGA
LOC_Os07g45330
Os.31460.1.S1_at--714--3251Chr07:27042598..27042622 (25 bp)
CAACGGTATGTTACGCGATCCACAA
LOC_Os07g45330
Os.31460.1.S1_at--1032--6891Chr07:27042593..27042617 (25 bp)
GTATGTTACGCGATCCACAAATCCC
LOC_Os07g45330
Os.31460.1.S1_at--302--4631Chr07:27042584..27042608 (25 bp)
GCGATCCACAAATCCCTCATAAATT
LOC_Os07g45330
Os.31460.1.S1_at--391--3131Chr07:27042563..27042587 (25 bp)
AATTTCATGATTGCAGCTCACTTCA
LOC_Os07g45330
Target Sequence 
TCCTTCTCCAAGGATGCTTAAGGATGTGCATAGCCACTTTCAGAGTTCCATTCAACATGTCAGCACCATGGTGACAGCAA
TGGAGTTGTTCAAGGATGTGCACAATCACTTCCAAAATGTTGTTCAGCATGCCAATGCGATGGCCACGGCAATGGAGATG
TTCAGGGATGCACATGATCACTTCCAGGGTGCTGTGCAGAGTGTCAGCAGCGCAGCATCAGCCATCGAACGGTTCAAAGA
CGCACATGATCGTTTTCAGAATATCACTCACCATGGAAGCATGGTAGCAGCAGTGATGGAATGTGGTACCGATCATACAC
AAGAGAAGAAGATGTGCGAGGAACCCCAACAAAAGGCCAAAGTGACAGCTATAGCTGAAATTCAAAAGCTTGGCCTTACT
GGAAGCGAGGTGGTCTTCGCAGCAAGTATTTTCGCAAAGGAACCAAACCAAATGGAGATGTTTTTAGCACTCCCAGAAAT
CTATAAGAGGGACTACATAGTCCAAATGCTCAACGGTATGTTACGCGATCCACAAATCCCTCATAAATTTCATGATTGCA
GCTCACTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31460.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis