Browse Element(s) Details


Os.31606.1.S1_at

Description gb:AK107049.1
DB_XREF= gi:32992258
TID=Os.31606.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.31606 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1014_G12.29 (OJ1014_G12.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-C12, full insert sequence.
FL= gb:AK107049.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3767011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37600OsAffx.21227.2.S1_at11/111+21368717..21374088Agenet domain containing protein, expressed
LOC_Os01g37600OsAffx.21227.1.S1_x_at10/111+21368717..21374088Agenet domain containing protein, expressed
LOC_Os01g37610OsAffx.8980.1.S1_at11/111+21375625..21380557transposon protein, putative, unclassified, expressed
LOC_Os01g37610Os.27639.1.S1_x_at10/111+21375625..21380557transposon protein, putative, unclassified, expressed
LOC_Os01g37630Os.6157.1.S1_at11/111+21383602..21384871hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g37650Os.5258.1.A1_at11/111+21389176..21390528hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g37660OsAffx.11364.1.S1_at5/111+21392308..21392757hypothetical protein
LOC_Os01g37670Os.31606.1.S1_at11/111+21395354..21397056F-box domain containing protein, expressed
LOC_Os01g37690Os.19755.2.S1_a_at11/111+21398344..21403577Vacuolar cation/proton exchanger 1a, putative, expressed
LOC_Os01g37700OsAffx.32106.1.S1_at11/111+21404854..21406169hypothetical protein
LOC_Os01g37700OsAffx.32106.2.S1_x_at5/111+21404854..21406169hypothetical protein
LOC_Os01g37710NANA1+21409660..21413408hypothetical protein
LOC_Os01g37720Os.40855.2.S1_x_at8/111+21421725..21422612hypothetical protein
LOC_Os01g37720Os.40855.4.S1_x_at3/111+21421725..21422612hypothetical protein
LOC_Os01g37720Os.40855.4.S1_at1/111+21421725..21422612hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31606.1.S1_at--1100--5911Chr01:21396488..21396512 (25 bp)
GAGCTTCTACATTCCTGGTGTCCAT
LOC_Os01g37670
Os.31606.1.S1_at--958--1491Chr01:21396523..21396547 (25 bp)
AGCACAGCGGACCTCAGATCAGTAA
LOC_Os01g37670
Os.31606.1.S1_at--794--6011Chr01:21396605..21396629 (25 bp)
GAGAGAGCGTGCTCCACTGCATCAG
LOC_Os01g37670
Os.31606.1.S1_at--969--2471Chr01:21396654..21396678 (25 bp)
AACAGCCAACGTCCTACTGGTGATA
LOC_Os01g37670
Os.31606.1.S1_at--842--1951Chr01:21396669..21396693 (25 bp)
ACTGGTGATATGGTCCGTTCTTCAG
LOC_Os01g37670
Os.31606.1.S1_at--862--6731Chr01:21396685..21396709 (25 bp)
GTTCTTCAGGCCGTGCTAGCAGATT
LOC_Os01g37670
Os.31606.1.S1_at--982--6571Chr01:21396745..21396769 (25 bp)
GATTCGCAAGGTGGCAATAGCTGAC
LOC_Os01g37670
Os.31606.1.S1_at--159--3971Chr01:21396820..21396844 (25 bp)
CGGTTTTAGTCATTTGTGCGATCAA
LOC_Os01g37670
Os.31606.1.S1_at--374--6011Chr01:21396924..21396948 (25 bp)
GAGAGCTCTATCTCGTATCCGCTAA
LOC_Os01g37670
Os.31606.1.S1_at--463--7593Chr01:21396983..21397007 (25 bp)
GGGCTTTCCCATTGTCATACTGCAA
LOC_Os01g37670
Os.31606.1.S1_at--777--2711Chr01:21397028..21397052 (25 bp)
AAGCATTGCACACACTTTTCTTTCT
LOC_Os01g37670
Target Sequence 
GAGCTTCTACATTCCTGGTGTCCATCTCCAGCAGCAGCACAGCGGACCTCAGATCAGTAATGGCCGGGCATGGGGATCGC
AGGCTGCTAACATGAGGCGTGGCANCAGTGAGCAGCCGAGAGAGCGTGCTCCACTGCATCAGCAGCGACGGGCAGGACGG
CCGGTGAACAGCCAACGTCCTACTGGTGATATGGTCCGTTCTTCAGGCCGTGCTAGCAGATTGGCATCTCAAGTGCGGCC
TCCATGGAGACCCTAATGATTCGCAAGGTGGCAATAGCTGACAATAATGTTTAATCTATCGTGCAATTTACAGGTGGTAT
ATTGCTAATCGTCGGTTTTAGTCATTTGTGCGATCAAGAAGAATATCTTATGGTTTTGAATGCATTGTCAGTACAGAATA
TCTAAACATGGAAAGAGCAGATTAACTGAGAGGAGTGAGAGCTCTATCTCGTATCCGCTAACTGAATTTCCAGTTATAAC
ATCCAATTTGTTTATGGGCTTTCCCATTGTCATACTGCAAGTCTGGTGAATGTTTATTTCAAGCATTGCACACACTTTTC
TTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31606.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis