Browse Element(s) Details


Os.31637.1.S1_at

Description gb:AK106997.1
DB_XREF= gi:32992206
TID=Os.31637.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31637 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glyoxal oxidase (B1144G04.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-B11, full insert sequence.
FL= gb:AK106997.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4854011/11Glyoxal oxidase N-terminus family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48520NANA1+28146666..28148938retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g48530OsAffx.11519.1.S1_at11/111+28160739..28162530expressed protein
LOC_Os01g48530Os.41729.1.S1_s_at11/111+28160739..28162530expressed protein
LOC_Os01g48540Os.31637.1.S1_at11/111+28167053..28169239Glyoxal oxidase N-terminus family protein, expressed
LOC_Os01g48550Os.30611.1.S1_at11/111+28170241..28171723expressed protein
LOC_Os01g48560OsAffx.11520.1.S1_at11/111+28175351..28175718hypothetical protein
LOC_Os01g48570NANA1+28179313..28182845expressed protein
LOC_Os01g48580OsAffx.21504.1.S1_at11/111+28184796..28188979ubiquitin-conjugating enzyme E2, putative
LOC_Os01g48580OsAffx.23846.1.A1_at3/111+28184796..28188979ubiquitin-conjugating enzyme E2, putative
LOC_Os01g48590NANA1+28192397..28192723hypothetical protein
LOC_Os01g48600OsAffx.32032.4.S1_s_at11/111+28193682..28194201CDS, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31637.1.S1_at--75--8911Chr01:28168646..28168670 (25 bp)
TGAACCCGTCGAACATCCCACGGAT
LOC_Os01g48540
Os.31637.1.S1_at--436--3451Chr01:28168881..28168905 (25 bp)
CAGGTTCACGTTCCGGTTCACGACG
LOC_Os01g48540
Os.31637.1.S1_at--195--8271Chr01:28168922..28168946 (25 bp)
GGCAGGGCGACTTCAAGGTGACCAT
LOC_Os01g48540
Os.31637.1.S1_at--893--4031Chr01:28168958..28168982 (25 bp)
CGTTCACGACGCATGGGTACTCCAT
LOC_Os01g48540
Os.31637.1.S1_at--622--671Chr01:28168981..28169005 (25 bp)
ATGAACCAGCGGCTGCTGATACTGC
LOC_Os01g48540
Os.31637.1.S1_at--701--8831Chr01:28168997..28169021 (25 bp)
TGATACTGCCCGTCACGGCGTTCGC
LOC_Os01g48540
Os.31637.1.S1_at--1161--2011Chr01:28169090..28169114 (25 bp)
ACTACATGGTGTACGTGGTGGCGAA
LOC_Os01g48540
Os.31637.1.S1_at--691--2411Chr01:28169158..28169182 (25 bp)
AAAAGAGCATACGTGAACCCCGCGC
LOC_Os01g48540
Os.31637.1.S1_at--852--4151Chr01:28169180..28169204 (25 bp)
CGCGCGTGGTGCTTTGCATGTCAAC
LOC_Os01g48540
Os.31637.1.S1_at--213--7331Chr01:28169188..28169212 (25 bp)
GTGCTTTGCATGTCAACGGGAAACT
LOC_Os01g48540
Os.31637.1.S1_at--238--3991Chr01:28169204..28169228 (25 bp)
CGGGAAACTATTAACTCCTGAGGAT
LOC_Os01g48540
Target Sequence 
TGAACCCGTCGAACATCCCACGGATGTACCACTCCACCAGCGCGCTTCTCCCCGACGCCACCGTGCTCGTGGCCGGCAGC
AACACCAACTCGGCCTACAACTTCAGCGGCGTGGACTTCCCGACCGAGGTGCGCGTCGAGCGGTTCACCCCGCCGTACCT
CAGCCCGCAGCTGTCCCCCAACCGGCCGGCGATCGACGCGGCGTCCGTCCCCGGCGACGGCATGCGGTACGGCGCCAGGT
TCACGTTCCGGTTCACGACGCCCGCGCAGGGCGTGGGGCAGGGCGACTTCAAGGTGACCATGTACGCGCCGCCGTTCACG
ACGCATGGGTACTCCATGAACCAGCGGCTGCTGATACTGCCCGTCACGGCGTTCGCCGCGCAGGGGCAGCGGCACACGGT
CACCGTCGACGCGCCGCCCAAGCCGGAGCTCGCGCCGCCGGGTTACTACATGGTGTACGTGGTGGCGAAGGGGGTGCCGA
GCAAGGCTGCGTGGGTGAAGATGCACAAGTAAAAAAGAGCATACGTGAACCCCGCGCGCGTGGTGCTTTGCATGTCAACG
GGAAACTATTAACTCCTGAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31637.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis