Browse Element(s) Details


Os.3166.1.S1_at

Description gb:AK066944.1
DB_XREF= gi:32976962
TID=Os.3166.1
CNT=35
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3166 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013089H23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089H23, full insert sequence.
FL= gb:AK066944.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4996011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49900Os.10336.1.S1_at11/113+28397991..28405566zinc finger family protein, putative, expressed
LOC_Os03g49910OsAffx.19542.3.S1_x_at6/113+28407129..28411327retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g49920OsAffx.25653.1.S1_at11/113+28414232..28414537hypothetical protein
LOC_Os03g49930OsAffx.13428.3.S1_at10/113+28416126..28418512pentatricopeptide, putative, expressed
LOC_Os03g49940Os.3163.1.A1_at11/113+28419751..28422846Integral membrane protein DUF6 containing protein, expressed
LOC_Os03g49960Os.3166.1.S1_at11/113+28423320..28432844expressed protein
LOC_Os03g49970OsAffx.13429.1.S1_at10/113+28441670..28442887hypothetical protein
LOC_Os03g49980OsAffx.32166.1218.S1_x_at9/113+28446410..28456368retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g49980Os.7307.3.S1_x_at4/113+28446410..28456368retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3166.1.S1_at--311--7071Chr03:28424333..28424357 (25 bp)
GTCAAGGATGAAGTTCTAACCGAAG
LOC_Os03g49960
Os.3166.1.S1_at--614--91Chr03:28424156..28424180 (25 bp)
ATTCCGAATGGACGCACTACTCAAT
LOC_Os03g49960
Os.3166.1.S1_at--190--2251Chr03:28424106..28424130 (25 bp)
AAATATACCATTTAACACACAGGGA
LOC_Os03g49960
Os.3166.1.S1_at--1024--9991Chr03:28423952..28424082 (25 bp)
TAGCGATGTTAGGTTACGTGATCTA
LOC_Os03g49960
Os.3166.1.S1_at--42--4011Chr03:28423936..28423960 (25 bp)
CGTGATCTAATCGTATTGGTCTTGA
LOC_Os03g49960
Os.3166.1.S1_at--1139--11Chr03:28423922..28423946 (25 bp)
ATTGGTCTTGAGAACTTTCCAGAGT
LOC_Os03g49960
Os.3166.1.S1_at--655--2291Chr03:28423785..28423809 (25 bp)
AAAGGTTTAGACTTGGATTCTGTGT
LOC_Os03g49960
Os.3166.1.S1_at--933--2971Chr03:28423632..28423656 (25 bp)
AATGTGTAGTATGTGTTGTTCTGCT
LOC_Os03g49960
Os.3166.1.S1_at--1037--8811Chr03:28423619..28423643 (25 bp)
TGTTGTTCTGCTTTTCGCATTTCTT
LOC_Os03g49960
Os.3166.1.S1_at--971--3011Chr03:28423517..28423541 (25 bp)
AATCCAATGCTGTAAGTAAACTTCA
LOC_Os03g49960
Os.3166.1.S1_at--972--6151Chr03:28423492..28423516 (25 bp)
GAGGTATTCTCTGCAGCCATCTAAT
LOC_Os03g49960
Target Sequence 
GTCAAGGATGAAGTTCTAACCGAAGAGAAATATTCATCAAATCTACAGACAAAAATTCCGAATGGACGCACTACTCAATT
TGTTTTAGTTAGTTCTGGAGGTGTAAATATACCATTTAACACACAGGGAATATCAGAACCAAATAACGAGGATAGCGATG
TTAGGTTACGTGATCTAATCGTATTGGTCTTGAGAACTTTCCAGAGTAAGGNNNNNNNNNNNNNNNCATTAGATGCTAAA
AGGAAAGGAAAGGTTTAGACTTGGATTCTGTGTAGAAGAATTTTGCTCATTGTTTTGTGCAGTCTTCACTTTTTGGATTT
TGAGATGAAAGGACACATTTTAAGACTTAAATGGTGGTGTGTAGGCAAAAAAAAAAANAAGAAGATCAAATCAGTGTTAA
AAATGTGTAGTATGTGTTGTTCTGCTTTTCGCATTTCTTTTCTTTCCCCATGTTTTCCCCCTCTGCTAGGTTATTTAGTT
TTAGAGATACTATTGTATTTAATGAAGTCTGAGAAAAATCCAATGCTGTAAGTAAACTTCAGAGGTATTCTCTGCAGCCA
TCTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3166.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis