Browse Element(s) Details


Os.31729.2.S1_x_at

Description gb:AK067132.1
DB_XREF= gi:32977150
TID=Os.31729.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31729 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (B1109A06.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013096M08, full insert sequence.
FL= gb:AK067132.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g296801/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29620OsAffx.19542.3.S1_x_at3/111+16928784..16932692retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g29640OsAffx.23450.1.S1_at8/111+16939592..16940065hypothetical protein
LOC_Os01g29650NANA1+16943797..16946112retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g29660OsAffx.22947.1.S1_x_at9/111+16948266..16949495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29660OsAffx.22947.3.S1_x_at6/111+16948266..16949495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29660OsAffx.22947.2.S1_x_at5/111+16948266..16949495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29670OsAffx.22947.5.S1_x_at3/111+16949589..16952828retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29680Os.31729.2.S1_x_at1/111+16956895..16959666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g29690NANA1+16963803..16964305expressed protein
LOC_Os01g29700NANA1+16971595..16974900transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g29710Os.47463.1.S1_x_at5/111+16976394..16981237transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g29710Os.14491.2.S1_x_at4/111+16976394..16981237transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g29710Os.41934.1.A1_x_at2/111+16976394..16981237transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g29720OsAffx.9762.1.S1_at9/111+16982924..16983816hypothetical protein
LOC_Os01g29730NANA1+16984302..16985380hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31729.2.S1_x_at--331--6311Chr01:16961939..16961963 (25 bp)
GATGAAACCGGCATCACAGGCCAAG
NONE
Os.31729.2.S1_x_at--709--5471Chr01:16961893..16961917 (25 bp)
GAACTTCGAAGACGATTTAATCCCT
NONE
Os.31729.2.S1_x_at--920--6511Chr01:16961880..16961904 (25 bp)
GATTTAATCCCTGTCTTTGGTGAAA
NONE
Os.31729.2.S1_x_at--894--3291Chr01:16961852..16961876 (25 bp)
CAAATCATCATGATTCACCATGGTA
NONE
Os.31729.2.S1_x_at--552--9671Chr01:16961587..16961862 (25 bp)
TCACCATGGTATTAGGAGACGAACA
NONE
Os.31729.2.S1_x_at--678--251Chr01:16961551..16961575 (25 bp)
ATATCTCATGCTTTTATGGAACCAG
NONE
Os.31729.2.S1_x_at--164--8191Chr01:16961534..16961558 (25 bp)
GGAACCAGCTAATGTGAGAGTATCA
NONE
Os.31729.2.S1_x_at--1096--8011Chr01:16961506..16961530 (25 bp)
GGAGTCTTGGCCGAATCCGTTGCTC
NONE
Os.31729.2.S1_x_at--643--4111Chr01:16961495..16961519 (25 bp)
CGAATCCGTTGCTCATGGCTGGTAG
NONE
Os.31729.2.S1_x_at--778--271Chr01:16961460..16961481 (22 bp)
ATAGGATTCCACACTACGAGGTCGG
NONE
Os.31729.2.S1_x_at--659--4931Chr01:16958083..16958107 (25 bp)
GCTTGTTCCGCTTTATCTTGGATGA
LOC_Os01g29680
Target Sequence 
GATGAAACCGGCATCACAGGCCAAGCCCAAGGCAACAGTGGGGTTTGAACTTCGAAGACGATTTAATCCCTGTCTTTGGT
GAAAACACAAATCATCATGATTCACCATGGTATTAGGAGACGAACAACTACAGGGGAATATCTCATGCTTTTATGGAACC
AGCTAATGTGAGAGTATCAAGGGGAGTCTTGGCCGAATCCGTTGCTCATGGCTGGTAGGAGTGAGGAGTACATAGGATTC
CACACTACGAGGTCGGGAGAGGTTCCTCCTTGTTGATGGGAAACGGATCGTTTGCGGTTGTTCATGGTGTAGGTACGATC
GATCTGAAGTTTACTTCGGGAAAGATCGTGCAGCTGAAGAACGTGCAGCATGTCCCTTCAATAAAGAAGAATCTAGTTAG
CGGCTCTCTACTGTGTAGAGATGGTTTTAGACTTGTGTTTGAATCCAATAAATGTGTCGTATCTAAATATGGCACGTTTA
TTGGAAAAGGTTATGACAGCGGAGGCTTGTTCCGCTTTATCTTGGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31729.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis