Browse Element(s) Details


Os.31771.1.S1_at

Description gb:AK064412.1
DB_XREF= gi:32974430
TID=Os.31771.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31771 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-A08, full insert sequence.
FL= gb:AK064412.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5147911/11Maf-like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51440OsAffx.3575.1.S1_at11/113+29376948..29380996Leucine Rich Repeat family protein, expressed
LOC_Os03g51450NANA3+29383180..29383539hypothetical protein
LOC_Os03g51470Os.10468.1.S1_at11/113+29401687..29404169expressed protein
LOC_Os03g51479Os.55664.1.S1_at11/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51479Os.31771.2.S1_at11/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51479Os.31771.2.S1_x_at11/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51479Os.31771.1.S1_at11/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51479OsAffx.5618.1.S1_at1/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51479OsAffx.5618.1.S1_x_at1/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51490Os.31771.3.S1_at10/113+29407570..29409263expressed protein
LOC_Os03g51510OsAffx.3576.1.S1_s_at11/113+29413483..29416252Mitochondrial 60S ribosomal protein L6, putative, expressed
LOC_Os03g51510Os.7389.1.S1_at11/113+29413483..29416252Mitochondrial 60S ribosomal protein L6, putative, expressed
LOC_Os03g51520Os.25317.1.S1_at11/113+29418244..29428601Fip1 motif family protein, expressed
LOC_Os03g51530Os.54698.1.S1_at11/113+29429795..29430440expressed protein
LOC_Os03g51540Os.33892.2.S1_x_at10/113+29430880..29435426Lariat debranching enzyme, C-terminal domain containing protein, expressed
LOC_Os03g51540Os.33892.1.S1_at8/113+29430880..29435426Lariat debranching enzyme, C-terminal domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31771.1.S1_at--868--3591Chr03:29407828..29407852 (25 bp)
CTTGGCCCTCGTATTGGGTGGAACA
LOC_Os03g51479
Os.31771.1.S1_at--898--7771Chr03:29407878..29407902 (25 bp)
GGTGCTTGAATATATCAGACCCTAT
LOC_Os03g51479
Os.31771.1.S1_at--182--3291Chr03:29407953..29407977 (25 bp)
CAAACTCGCAAGTCGTCATGTCAAC
LOC_Os03g51479
Os.31771.1.S1_at--879--9711Chr03:29407973..29407997 (25 bp)
TCAACGCTGAAGACGTGCAGGCTCC
LOC_Os03g51479
Os.31771.1.S1_at--820--9391Chr03:29408015..29408039 (25 bp)
TCGTAGAAATCACCCGCCATGAGAT
LOC_Os03g51479
Os.31771.1.S1_at--629--811Chr03:29408143..29408167 (25 bp)
ATGGATACTACCAACCTTGTGCCAC
LOC_Os03g51479
Os.31771.1.S1_at--316--1591Chr03:29408175..29408199 (25 bp)
AGCTCGGCGTCAAATCCCACATGGA
LOC_Os03g51479
Os.31771.1.S1_at--455--7411Chr03:29408225..29408249 (25 bp)
GTGTTGTATCCCTCGATGGAGACGA
LOC_Os03g51479
Os.31771.1.S1_at--634--8551Chr03:29408256..29408280 (25 bp)
TGGAGTCACTGATGCAACGGATATC
LOC_Os03g51479
Os.31771.1.S1_at--1104--6091Chr03:29408315..29408339 (25 bp)
GAGTCGCAACCAACGTAGCAACCAT
LOC_Os03g51479
Os.31771.1.S1_at--529--9771Chr03:29408354..29408378 (25 bp)
TAACCAAATTGCAAATCGTCGTCGT
LOC_Os03g51479
Target Sequence 
CTTGGCCCTCGTATTGGGTGGAACAAGCTGACAGAGATTATCCATCTTGAGGTGCTTGAATATATCAGACCCTATCAGGG
ATGGAGGACCCGAATGGCGCCAAGGAGGAAGGCGCCAAGCCGACACAAACTCGCAAGTCGTCATGTCAACGCTGAAGACG
TGCAGGCTCCTGTGCTTCTCATCCTCCTCGTAGAAATCACCCGCCATGAGATACACGACGCCGTCCTCCTCGCTGCTCAA
CATGGGCTGGGTCGGCGACGTGTTCGTCGGCAACCCTGATCTCCTGAACCCCTCCTGCTCCCACAAGCTCCCAACATGGA
TACTACCAACCTTGTGCCACTGCCTTGAGCTCGGCGTCAAATCCCACATGGATAATAGCATGTCGTATGGAGGATCGGTG
TTGTATCCCTCGATGGAGACGAATCTGATGGAGTCACTGATGCAACGGATATCACGATACTGTGACGGCAGATGAGTGAG
ATAGAGCGAGTCGCAACCAACGTAGCAACCATCGGGTAATTGGATGTAACCAAATTGCAAATCGTCGTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31771.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis