Browse Element(s) Details


Os.31838.1.S1_at

Description gb:AK106658.1
DB_XREF= gi:32991867
TID=Os.31838.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31838 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-G09, full insert sequence.
FL= gb:AK106658.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2487010/11Sugar transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24820Os.46762.1.S1_at2/113+14122793..14125467expressed protein
LOC_Os03g24830OsAffx.25213.1.S1_at11/113+14126503..14129148expressed protein
LOC_Os03g24830Os.8404.1.S1_s_at11/113+14126503..14129148expressed protein
LOC_Os03g24844Os.18653.1.S1_at11/113+14129295..14132486Uncharacterised protein family containing protein, expressed
LOC_Os03g24860Os.24794.2.S1_at11/113+14132678..14137979Sugar transporter family protein, expressed
LOC_Os03g24860Os.24794.1.S1_x_at10/113+14132678..14137979Sugar transporter family protein, expressed
LOC_Os03g24870Os.31838.1.S1_at10/113+14144400..14149212Sugar transporter family protein, expressed
LOC_Os03g24880OsAffx.25214.1.S1_at11/113+14153330..14155024pentatricopeptide, putative
LOC_Os03g24890Os.6246.1.S1_at11/113+14155226..14159818RNA recognition motif family protein, expressed
LOC_Os03g24890OsAffx.25215.1.S1_at10/113+14155226..14159818RNA recognition motif family protein, expressed
LOC_Os03g24890OsAffx.10482.1.S1_x_at1/113+14155226..14159818RNA recognition motif family protein, expressed
LOC_Os03g24900Os.10674.1.S1_at11/113+14162432..14166957zinc finger family protein, putative, expressed
LOC_Os03g24910OsAffx.3315.1.S1_s_at11/113+14167517..14171210nodulation protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31838.1.S1_at--95--10051Chr03:14145207..14145231 (25 bp)
TAGTTGGTTAGGTTCCTTCGCGATT
LOC_Os03g24870
Os.31838.1.S1_at--1130--9331Chr03:14145190..14145214 (25 bp)
TCGCGATTTCTTACTCGTTCAGCTT
LOC_Os03g24870
Os.31838.1.S1_at--563--8111Chr03:14144815..14145183 (25 bp)
GGACTGGAGTTCTGCAGGGACCTTC
LOC_Os03g24870
Os.31838.1.S1_at--953--10611Chr03:14144754..14144778 (25 bp)
TTCGTGGTGATGGTCGTGCCTGAAA
LOC_Os03g24870
Os.31838.1.S1_at--998--6171Chr03:14144712..14144736 (25 bp)
GAGGAGATTCAGGACTCGCTCATCG
LOC_Os03g24870
Os.31838.1.S1_at--518--1351Chr03:14144653..14144677 (25 bp)
AGAGATATGATCCACTTGCTCCACT
LOC_Os03g24870
Os.31838.1.S1_at--328--8271Chr03:14144536..14144560 (25 bp)
GGCAGTTTTGCCGTAGTGTACTCAA
LOC_Os03g24870
Os.31838.1.S1_at--1012--1551Chr03:14144506..14144530 (25 bp)
AGCTAGGCTAAGTCCCGGGCTACTA
LOC_Os03g24870
Os.31838.1.S1_at--176--7591Chr03:14144490..14144514 (25 bp)
GGGCTACTACGCATGCAAGCTATGT
LOC_Os03g24870
Os.31838.1.S1_at--116--271Chr03:14144412..14144436 (25 bp)
ATATGTGTGTTCTGAGGCTTTACGC
LOC_Os03g24870
Os.31838.1.S1_at--314--11Chr03:14144399..14144422 (24 bp)
AGGCTTTACGCTGTTTTGTCGTGAA
NONE
Target Sequence 
TAGTTGGTTAGGTTCCTTCGCGATTTCTTACTCGTTCAGCTTCCTCATGGACTGGAGTTCTGCAGGGACCTTCTTCATGT
TCTCCGCGGCGAGCTTGATCACCATCCTGTTCGTGGTGATGGTCGTGCCTGAAACCAAAGGGAGGACGCTCGAGGAGATT
CAGGACTCGCTCATCGACTCCAGATCAAGATTGAGGGATCCATAGACCATAGAGATATGATCCACTTGCTCCACTCTTTC
TACCTGAGCCGCCGTCAAATTCGACGCACCTCTCTCTCTCACTCTCTCTGTCTCTTTAGCCTCCTGATCTTTCTCTCTCC
GGTTCTTGGCAGTTTTGCCGTAGTGTACTCAATACCTAGCTAGGCTAAGTCCCGGGCTACTACGCATGCAAGCTATGTAT
ACCATGTCACTCTGAATTGTATTGAGCAATATATATATGGGACACACACACATATGTGTGTTCTGAGGCTTTACGCTGTT
TTGTCGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31838.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis