Browse Element(s) Details


Os.31845.1.S1_at

Description gb:AK106647.1
DB_XREF= gi:32991856
TID=Os.31845.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31845 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-F02, full insert sequence.
FL= gb:AK106647.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g162103/11hypothetical protein
LOC_Os03g365803/11hypothetical protein
LOC_Os04g226101/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g16160OsAffx.13835.1.S1_at11/114+8758756..8760142hypothetical protein
LOC_Os04g16170NANA4+8762507..8766627retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g16180NANA4+8767125..8768219retrotransposon protein, putative, unclassified
LOC_Os04g16190OsAffx.19035.2.S1_at11/114+8769564..8772400hypothetical protein
LOC_Os04g16190OsAffx.13772.1.S1_at2/114+8769564..8772400hypothetical protein
LOC_Os04g16190OsAffx.13772.1.S1_x_at1/114+8769564..8772400hypothetical protein
LOC_Os04g16190OsAffx.19035.1.S1_x_at1/114+8769564..8772400hypothetical protein
LOC_Os04g16200OsAffx.22699.1.S1_x_at3/114+8773104..8780015retrotransposon protein, putative, unclassified
LOC_Os04g16200Os.52731.1.S1_at1/114+8773104..8780015retrotransposon protein, putative, unclassified
LOC_Os04g16200OsAffx.18275.1.S1_x_at1/114+8773104..8780015retrotransposon protein, putative, unclassified
LOC_Os04g16210Os.38764.1.S1_x_at6/114+8780432..8782610hypothetical protein
LOC_Os04g16210Os.31845.1.S1_x_at4/114+8780432..8782610hypothetical protein
LOC_Os04g16210Os.31845.1.S1_at3/114+8780432..8782610hypothetical protein
LOC_Os04g16220NANA4+8785341..8786489hypothetical protein
LOC_Os04g16230OsAffx.27824.1.S1_at1/114+8794887..8796071hypothetical protein
LOC_Os04g16240NANA4+8798716..8800611retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g16250NANA4+8802023..8808543retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31845.1.S1_at--923--3851Chr04:8780887..8780911 (25 bp)
CTGATTCTCGAAGAACTGGCCGCTG
LOC_Os04g16210
Os.31845.1.S1_at--510--6571Chr04:8780885..8780909 (25 bp)
GATTCTCGAAGAACTGGCCGCTGTC
LOC_Os04g16210
Os.31845.1.S1_at--173--1171Chr04:8780726..8780750 (25 bp)
AGTCAAACTAGATTAGCTATCTGAG
LOC_Os04g16210
Os.31845.1.S1_at--39--100124Chr12:8591075..8591101 (25 bp)
TAGGACTTAGAAATTTTTGTAATCG
NONE
Os.31845.1.S1_at--1132--6932Chr04:8780378..8780402 (25 bp)
GTAATCGGCTAAGATGCCTTAATAC
NONE
Os.31845.1.S1_at--559--9772Chr04:8780369..8780393 (25 bp)
TAAGATGCCTTAATACCCCGCTGTT
NONE
Os.31845.1.S1_at--938--6352Chr04:8780366..8780390 (25 bp)
GATGCCTTAATACCCCGCTGTTTTA
NONE
Os.31845.1.S1_at--713--41115Chr09:17624371..17624394 (24 bp)
CGCTGTTTTAACAATCCTTTGTGCC
NONE
Os.31845.1.S1_at--413--36918Chr12:8582484..8582505 (22 bp)
CTTTGTGCCGATTAACATAACTTCC
NONE
Os.31845.1.S1_at--238--72916Chr09:17624390..17624449 (25 bp)
GTGCCGATTAACATAACTTCCAATT
NONE
Os.31845.1.S1_at--370--44914Chr09:17624392..17624451 (25 bp)
GCCGATTAACATAACTTCCAATTTT
NONE
Target Sequence 
CTGATTCTCGAAGAACTGGCCGCTGTCCTAACTCCAGCCGCTTATCTCGAGCAAAACCAGTTCAAGCTGGAAAAAGCCAA
TCAAAGACTAGCCGAACGCCGTGAGTGCAAGGAGATTGAAGCCACAATCCAGGTCAATCGACAGCTTGTGCATGAAGAAA
AAGTCAAACTAGATTAGCTATCTGAGGGTCCGATTAAGTCCAATATTAATCGGCTCAAAGCTCGCAAGATCGATCTCTTG
GCACAGCTTGAAGAATGCAATGCTGAACTAGATATGGAGCACAAAAGGCTAGCCGATCTCCCAAAATCTGTCGAAGAGCA
GAAAGCAAGGCTTAAATCGGCTATCAAGAATGTTGCTGACCTAACCAAGTCCCTGAAGGTCATTTCTGGAACCGATGCTC
AAGATGCCCAAGCTATTGAAGAAGTCAAACAAATTAGGCAAAGGGCTATTTTGGCTATCCAACGGTACTTGTCTCAATAA
CTTTTGTGTAATAGGACTTAGAAATTTTTGTAATCGGCTAAGATGCCTTAATACCCCGCTGTTTTAACAATCCTTTGTGC
CGATTAACATAACTTCCAATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31845.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis