Browse Element(s) Details


Os.32086.1.S1_at

Description gb:AK101559.1
DB_XREF= gi:32986768
TID=Os.32086.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32086 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative uncharacterized hypothalamus protein HT010 (P0460C04.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033050C24, full insert sequence.
FL= gb:AK101559.1 gb:AK106074.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6183011/11Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61780Os.14624.2.S1_x_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_a_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_x_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61800OsAffx.21767.1.S1_at6/111+36079339..36081044ZmEBE-1 protein, putative, expressed
LOC_Os01g61810Os.22637.1.S1_a_at11/111+36083183..36085512CCAAT-binding transcription factor subunit HAP3A, putative, expressed
LOC_Os01g61820Os.26532.1.S1_a_at11/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820Os.26532.1.S1_x_at11/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820Os.26532.2.S1_x_at11/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820Os.57454.1.S1_x_at7/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820OsAffx.28576.2.S1_x_at1/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820OsAffx.22334.1.S1_at1/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61830Os.32086.3.S1_s_at11/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61830Os.32086.1.S1_at11/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61830Os.32086.2.S1_x_at11/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61830Os.32086.3.S1_x_at10/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61840OsAffx.23886.1.S1_x_at5/111+36102919..36103158hypothetical protein
LOC_Os01g61850NANA1+36108739..36109430expressed protein
LOC_Os01g61860OsAffx.23887.2.S1_x_at11/111+36111315..36120301RabGAP/TBC domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32086.1.S1_at--745--5171Chr01:36099007..36099031 (25 bp)
GCAAGTGCAATTTGTTTCAACCAGA
LOC_Os01g61830
Os.32086.1.S1_at--1122--3231Chr01:36099024..36099048 (25 bp)
CAACCAGACTGATCATCTATCCATG
LOC_Os01g61830
Os.32086.1.S1_at--764--9091Chr01:36099061..36099085 (25 bp)
TGCTCAGTGCTGTTATGACATGACA
LOC_Os01g61830
Os.32086.1.S1_at--846--31Chr01:36099086..36099110 (25 bp)
ATTGATTTTTTGACGCATCTGCCCT
LOC_Os01g61830
Os.32086.1.S1_at--68--1851Chr01:36099098..36099122 (25 bp)
ACGCATCTGCCCTTTATATTATCTT
LOC_Os01g61830
Os.32086.1.S1_at--1108--431Chr01:36099118..36099142 (25 bp)
ATCTTTGCGGGAGTTACGTTGCTAC
LOC_Os01g61830
Os.32086.1.S1_at--554--6071Chr01:36099128..36099152 (25 bp)
GAGTTACGTTGCTACTTGTGAATAA
LOC_Os01g61830
Os.32086.1.S1_at--888--2491Chr01:36099151..36099175 (25 bp)
AACATGACTACTTTTTGGCCTCGTG
LOC_Os01g61830
Os.32086.1.S1_at--908--10351Chr01:36099162..36099186 (25 bp)
TTTTTGGCCTCGTGCACACTATAAC
LOC_Os01g61830
Os.32086.1.S1_at--829--7331Chr01:36099173..36099197 (25 bp)
GTGCACACTATAACCGATTTTTGAT
LOC_Os01g61830
Os.32086.1.S1_at--1060--5531Chr01:36099200..36099224 (25 bp)
GAAACATTGCCATAAGTTCATCAGG
LOC_Os01g61830
Target Sequence 
GCAAGTGCAATTTGTTTCAACCAGACTGATCATCTATCCATGATTAGTGAATGATGCTCAGTGCTGTTATGACATGACAA
TTGATTTTTTGACGCATCTGCCCTTTATATTATCTTTGCGGGAGTTACGTTGCTACTTGTGAATAACATGACTACTTTTT
GGCCTCGTGCACACTATAACCGATTTTTGATGTGAAACATTGCCATAAGTTCATCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32086.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis