Browse Element(s) Details


Os.32086.2.S1_x_at

Description gb:AK058413.1
DB_XREF= gi:32968431
TID=Os.32086.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32086 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative uncharacterized hypothalamus protein HT010 (P0460C04.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-015-C12, full insert sequence.
FL= gb:AK058413.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6183011/11Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61780Os.14624.2.S1_x_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_a_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_x_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61800OsAffx.21767.1.S1_at6/111+36079339..36081044ZmEBE-1 protein, putative, expressed
LOC_Os01g61810Os.22637.1.S1_a_at11/111+36083183..36085512CCAAT-binding transcription factor subunit HAP3A, putative, expressed
LOC_Os01g61820Os.26532.1.S1_a_at11/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820Os.26532.1.S1_x_at11/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820Os.26532.2.S1_x_at11/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820Os.57454.1.S1_x_at7/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820OsAffx.28576.2.S1_x_at1/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820OsAffx.22334.1.S1_at1/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61830Os.32086.3.S1_s_at11/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61830Os.32086.1.S1_at11/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61830Os.32086.2.S1_x_at11/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61830Os.32086.3.S1_x_at10/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61840OsAffx.23886.1.S1_x_at5/111+36102919..36103158hypothetical protein
LOC_Os01g61850NANA1+36108739..36109430expressed protein
LOC_Os01g61860OsAffx.23887.2.S1_x_at11/111+36111315..36120301RabGAP/TBC domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32086.2.S1_x_at--156--6751Chr01:36098741..36098765 (25 bp)
GTTCATCAACTTCTAATGGCAAGGA
LOC_Os01g61830
Os.32086.2.S1_x_at--1010--6291Chr01:36098800..36098824 (25 bp)
GATGATGACCTGGACATTGATGAGT
LOC_Os01g61830
Os.32086.2.S1_x_at--142--6311Chr01:36098818..36098842 (25 bp)
GATGAGTTAAACGAGCTTGAAGCAA
LOC_Os01g61830
Os.32086.2.S1_x_at--692--10711Chr01:36098834..36098858 (25 bp)
TTGAAGCAAGCCTGTCAAGAACTTC
LOC_Os01g61830
Os.32086.2.S1_x_at--646--2751Chr01:36098850..36098874 (25 bp)
AAGAACTTCCATTCAGATTCGAGAA
LOC_Os01g61830
Os.32086.2.S1_x_at--972--2611Chr01:36098873..36098897 (25 bp)
AACCTGGCGAGGGAACATCATCTTG
LOC_Os01g61830
Os.32086.2.S1_x_at--478--5491Chr01:36098885..36098909 (25 bp)
GAACATCATCTTGAGCAGTAACACT
LOC_Os01g61830
Os.32086.2.S1_x_at--202--3411Chr01:36098900..36098924 (25 bp)
CAGTAACACTCTGGACTGGAAGGCC
LOC_Os01g61830
Os.32086.2.S1_x_at--683--6931Chr01:36098933..36098957 (25 bp)
GTAGAACACCATTTTTGCGCCTTAA
LOC_Os01g61830
Os.32086.2.S1_x_at--970--10371Chr01:36098945..36098969 (25 bp)
TTTTGCGCCTTAAATTGCCTACTTG
LOC_Os01g61830
Os.32086.2.S1_x_at--801--9831Chr01:36098955..36098979 (25 bp)
TAAATTGCCTACTTGCTTTAGAAAC
LOC_Os01g61830
Target Sequence 
GTTCATCAACTTCTAATGGCAAGGAGGTGGAAGAGTCCGATGATGAAGATATAAATATTGATGATGACCTGGACATTGAT
GAGTTAAACGAGCTTGAAGCAAGCCTGTCAAGAACTTCCATTCAGATTCGAGAACCTGGCGAGGGAACATCATCTTGAGC
AGTAACACTCTGGACTGGAAGGCCATTGAGAAGTAGAACACCATTTTTGCGCCTTAAATTGCCTACTTGCTTTAGAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32086.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis