Browse Element(s) Details


Os.322.1.S1_at

Description gb:AK066232.1
DB_XREF= gi:32976250
TID=Os.322.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.322 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013057M05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013057M05, full insert sequence.
FL= gb:AK066232.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3097011/11Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g30930Os.6225.2.S1_at11/116+17992240..17994417expressed protein
LOC_Os06g30940Os.55063.1.S1_at10/116+17996704..17999862pentatricopeptide, putative, expressed
LOC_Os06g30940OsAffx.20579.1.S1_at1/116+17996704..17999862pentatricopeptide, putative, expressed
LOC_Os06g30940OsAffx.20579.1.S1_x_at1/116+17996704..17999862pentatricopeptide, putative, expressed
LOC_Os06g30950Os.35365.1.S1_at11/116+18001698..18008342integral membrane protein, putative, expressed
LOC_Os06g30960OsAffx.15689.1.S1_at11/116+18011565..18012696hypothetical protein
LOC_Os06g30970Os.322.1.S1_at11/116+18014523..18016698Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os06g30980OsAffx.31777.1.S1_at11/116+18022967..18025688hypothetical protein
LOC_Os06g30980OsAffx.31777.1.S1_x_at11/116+18022967..18025688hypothetical protein
LOC_Os06g30980OsAffx.25156.5.S1_x_at1/116+18022967..18025688hypothetical protein
LOC_Os06g30990OsAffx.435.1.S1_at1/116+18027001..18029743retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g30990Os.43124.1.S1_at1/116+18027001..18029743retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g31000Os.47114.1.S1_x_at1/116+18030977..18040297retrotransposon protein, putative, unclassified
LOC_Os06g31010NANA6+18040939..18041874retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.322.1.S1_at--829--2311Chr06:18015121..18015145 (25 bp)
AAAGGTGAATTGATCCTCTCCCTCT
LOC_Os06g30970
Os.322.1.S1_at--635--5551Chr06:18015083..18015107 (25 bp)
GAAACCCTTTGAGACAGCTTGTGCA
LOC_Os06g30970
Os.322.1.S1_at--600--7331Chr06:18015063..18015087 (25 bp)
GTGCATGTGCAAAAGCTTAGCTTCT
LOC_Os06g30970
Os.322.1.S1_at--255--5911Chr06:18014965..18014989 (25 bp)
GAGCTCTCATAGTCTCTAGGGCTTA
LOC_Os06g30970
Os.322.1.S1_at--145--2471Chr06:18014941..18014965 (25 bp)
AACAAATGCCCAACACCGTATATCA
LOC_Os06g30970
Os.322.1.S1_at--173--251Chr06:18014922..18014946 (25 bp)
ATATCACCTGCGTGCTAATCTGGTT
LOC_Os06g30970
Os.322.1.S1_at--996--9611Chr06:18014844..18014868 (25 bp)
TCAGGTACTCCTCTCAATTTGTTCT
LOC_Os06g30970
Os.322.1.S1_at--989--3111Chr06:18014829..18014853 (25 bp)
AATTTGTTCTCTACTGACGGACCCA
LOC_Os06g30970
Os.322.1.S1_at--1145--4851Chr06:18014790..18014814 (25 bp)
GCTAGTTCCGGAGATTGCGCACATG
LOC_Os06g30970
Os.322.1.S1_at--744--10071Chr06:18014690..18014714 (25 bp)
TAGGCCGATAGTGTTCTCTAGCGAT
LOC_Os06g30970
Os.322.1.S1_at--850--6411Chr06:18014650..18014674 (25 bp)
GATCTAGTGTTCATGTCCTGCTACA
LOC_Os06g30970
Target Sequence 
AAAGGTGAATTGATCCTCTCCCTCTCCAACTAAGTCAAGAAACCCTTTGAGACAGCTTGTGCATGTGCAAAAGCTTAGCT
TCTTTGAAGTTGTCACATANAAACTACTTACTTGAGAAGTTANGCACTTTGGCACCATAGAAATGTNANGAAGTTGGAGC
TCTCATAGTCTCTAGGGCTTAACAAATGCCCAACACCGTATATCACCTGCGTGCTAATCTGGTTGGAGTAACTTTTGNTT
TCCAGTTGCACGAATTATCTAACGTTTGACACAATTTTCAGGTACTCCTCTCAATTTGTTCTCTACTGACGGACCCAAAC
CCAGACGACCCGCTAGTTCCGGAGATTGCGCACATGTACAAGACTGATCGGGCCAAATATGAATCAACTGCGAGGGGCTG
GACCCAGAAATATGCAATGGGCTGAACGACGTAGGCCGATAGTGTTCTCTAGCGATATATGTTATCTTGTTGATCTAGTG
TTCATGTCCTGCTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.322.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis