Browse Element(s) Details


Os.32465.1.S1_at

Description gb:AK061452.1
DB_XREF= gi:32971470
TID=Os.32465.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32465 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-303-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-307-F07, full insert sequence.
FL= gb:AK061452.1 gb:AK104117.1 gb:AK104526.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5471011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54640Os.53009.1.A1_x_at11/112+33463269..33470154Receptor family ligand binding region containing protein, expressed
LOC_Os02g54650Os.20201.1.S1_at10/112+33470359..33478115diacylglycerol kinase, putative, expressed
LOC_Os02g54670OsAffx.24869.1.S1_at11/112+33481156..33482630hypothetical protein
LOC_Os02g54680OsAffx.12642.1.S1_at11/112+33483091..33483588hypothetical protein
LOC_Os02g54690OsAffx.3073.1.S1_at11/112+33485746..33487000initiation factor 3g, putative, expressed
LOC_Os02g54700Os.10955.1.S1_at11/112+33487552..33489978RNA recognition motif family protein, expressed
LOC_Os02g54710Os.32465.1.S1_at11/112+33490132..33492293expressed protein
LOC_Os02g54720OsAffx.24870.1.S1_at11/112+33496773..33499893hypothetical protein
LOC_Os02g54730Os.47600.1.S1_s_at11/112+33506102..33511848Transmembrane amino acid transporter protein, expressed
LOC_Os02g54730Os.47600.2.S1_x_at10/112+33506102..33511848Transmembrane amino acid transporter protein, expressed
LOC_Os02g54740OsAffx.15069.1.S1_at5/112+33512656..33517341retrotransposon protein, putative, unclassified
LOC_Os02g54740OsAffx.13657.1.S1_at1/112+33512656..33517341retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32465.1.S1_at--111--5851Chr02:33490702..33490726 (25 bp)
GACCATGTGTACGTTGTTCATCCTT
LOC_Os02g54710
Os.32465.1.S1_at--680--4991Chr02:33490675..33490699 (25 bp)
GCAGGCCGGATATCGGGCTACGACA
LOC_Os02g54710
Os.32465.1.S1_at--155--7391Chr02:33490560..33490584 (25 bp)
GTGATCTTGGGTATGTGACCTGCCT
LOC_Os02g54710
Os.32465.1.S1_at--1084--7371Chr02:33490546..33490570 (25 bp)
GTGACCTGCCTGGAGCTGGTTAAGA
LOC_Os02g54710
Os.32465.1.S1_at--246--271Chr02:33490375..33490399 (25 bp)
ATATGGCGTGAGGTTTTGCAGTACA
LOC_Os02g54710
Os.32465.1.S1_at--119--10651Chr02:33490334..33490358 (25 bp)
TTCGCTGTTTTCTTAAGGTCCTTGA
LOC_Os02g54710
Os.32465.1.S1_at--917--6491Chr02:33490311..33490335 (25 bp)
GATATGACCTTTTTGTAGAACCCTT
LOC_Os02g54710
Os.32465.1.S1_at--456--6231Chr02:33490210..33490234 (25 bp)
GATGGAATTGTAACTCGGCGTGGCT
LOC_Os02g54710
Os.32465.1.S1_at--936--8751Chr02:33490169..33490193 (25 bp)
TGTTAAGTCCCTTTTCCTACTGTTG
LOC_Os02g54710
Os.32465.1.S1_at--12--1971Chr02:33490151..33490175 (25 bp)
ACTGTTGTACGCTGCAATCTATCCG
LOC_Os02g54710
Os.32465.1.S1_at--340--9551Chr02:33490134..33490158 (25 bp)
TCTATCCGCGTGCAGATGTATTTTG
LOC_Os02g54710
Target Sequence 
GACCATGTGTACGTTGTTCATCCTTCGGCAGGCCGGATATCGGGCTACGACATGGTGATGCAGAGCTGGGAGATGGTGTG
CGACGCGGACTACGAGTTCCCTCTCCAGATTGATCTGCAGGATGTTGAGGTCCATGTGAGAGGTGATCTTGGGTATGTGA
CCTGCCTGGAGCTGGTTAAGACCAAAGGGAGCAGCAGCTGGGGAAGGCAGGTTGCGACCAATGTGTTTGAGAAGGTTGAT
GGCAAATGGTTCATTTGTATCCACCATGCCTCTCACTTCGATGAGTGAGGCTGAATTTCTTGGAGAGAGGAAGAGCTGCA
AGTGCAGATATGGCGTGAGGTTTTGCAGTACAGGCGTGAGACATATACTTCGCTGTTTTCTTAAGGTCCTTGATATGACC
TTTTTGTAGAACCCTTTTTGTACCAATACTATCATCGAATGATGCTGCTATTTTGAGGAGTATTAGTAGTAGGTACAGAC
AACCAGAACCCTGATGGAATTGTAACTCGGCGTGGCTGAGATATTCGTCAGACTGTTAAGTCCCTTTTCCTACTGTTGTA
CGCTGCAATCTATCCGCGTGCAGATGTATTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32465.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis