Browse Element(s) Details


Os.32503.1.S1_at

Description gb:AK066734.1
DB_XREF= gi:32976752
TID=Os.32503.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.32503 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-019-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013078I01, full insert sequence.
FL= gb:AK104002.1 gb:AK066734.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0843011/11Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08390Os.53396.1.S1_at11/117+4303920..4305813uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os07g08400Os.46949.1.A1_at6/117+4311094..4317484guanylate-binding family protein, putative, expressed
LOC_Os07g08410Os.7076.1.S1_at3/117+4317380..4318468expressed protein
LOC_Os07g08420Os.1501.1.S1_at11/117+4320535..4324972bZIP transcription factor family protein, expressed
LOC_Os07g08430Os.32503.1.S1_x_at11/117+4328716..4331942Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os07g08430Os.32503.1.S1_at11/117+4328716..4331942Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os07g08430OsAffx.10400.1.S1_x_at6/117+4328716..4331942Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os07g08430Os.18743.2.S1_x_at2/117+4328716..4331942Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os07g08440Os.8344.1.S1_at11/117+4336814..4340518Lipoamide dehydrogenase, putative, expressed
LOC_Os07g08450OsAffx.28344.1.S1_at11/117+4347336..4352164expressed protein
LOC_Os07g08460Os.8622.1.S1_at11/117+4353511..4354872AUX/IAA family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000162biological_processtryptophan biosynthesis
GO:0009507cellular_componentchloroplast
GO:0004834molecular_functiontryptophan synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32503.1.S1_at--475--2012Chr07:4329711..4329735 (25 bp)
AAAATTACAAAAGCTTCTGAAGGAT
LOC_Os07g08430
Os.32503.1.S1_at--342--9871Chr07:4329412..4329436 (25 bp)
TACAGGTGCACGTGCAAATGTCAGT
LOC_Os07g08430
Os.32503.1.S1_at--579--2331Chr07:4329246..4329270 (25 bp)
AAAGCTGTGGCTGTTGGGTTCGGTA
LOC_Os07g08430
Os.32503.1.S1_at--586--11Chr07:4328793..4328817 (25 bp)
ATACTAAATGTTGCGAAAAGGGCCT
LOC_Os07g08430
Os.32503.1.S1_at--261--8951Chr07:4328782..4328806 (25 bp)
TGCGAAAAGGGCCTAACACTGTTTT
LOC_Os07g08430
Os.32503.1.S1_at--378--1091Chr07:4328775..4328799 (25 bp)
AGGGCCTAACACTGTTTTCGCTTTG
LOC_Os07g08430
Os.32503.1.S1_at--28--9831Chr07:4328769..4328793 (25 bp)
TAACACTGTTTTCGCTTTGTCGTTG
LOC_Os07g08430
Os.32503.1.S1_at--247--6811Chr07:4328762..4328786 (25 bp)
GTTTTCGCTTTGTCGTTGGTGCAAA
LOC_Os07g08430
Os.32503.1.S1_at--83--4891Chr07:4328756..4328780 (25 bp)
GCTTTGTCGTTGGTGCAAATATCGA
LOC_Os07g08430
Os.32503.1.S1_at--431--10831Chr07:4328747..4328771 (25 bp)
TTGGTGCAAATATCGAAGAGCGGAT
LOC_Os07g08430
Os.32503.1.S1_at--907--511Chr07:4328736..4328760 (25 bp)
ATCGAAGAGCGGATATAAACGGAGA
LOC_Os07g08430
Target Sequence 
AAAATTACAAAAGCTTCTGAAGGATTTATTTATCTTGTAAGCACTGTTGGAGTTACAGGTGCACGTGCAAATGTCAGTGG
CAAGGTGCAATCTCTTCTCCAGGATATCAAGCAGGTCACGGACAAAGCTGTGGCTGTTGGGTTCGGTATATCGACTCCAG
AGCATGTGAAGCAGATTGCGGGATGGGGCGCAGATGGTGTGATCATTGGGAGCGCTATGGTGAGGCAATTGGGCGAAGCT
GCTTCACCCGAAGAAGGATTGAAGAAGCTAGAAGAGCTAGCCAAGAGCCTGAAGGCTGCATTGCCCTGAAACAATCAGTT
CCATGAGGAAAGAAAATACAGTCCATTTTTTTGTAGTCAGGTTTGAAGCATAGTATTGGGAGCATGACTTTTGCTATTGG
GGTTTTCGGGGTTACTGTTGTCTGTTGAAAATAATTAAGTCATTGTGTTAGTTGCTTGAACGAATAAATCAAGGTAAGAA
TGATACTAAATGTTGCGAAAAGGGCCTAACACTGTTTTCGCTTTGTCGTTGGTGCAAATATCGAAGAGCGGATATAAACG
GAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32503.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis