Browse Element(s) Details


Os.32569.2.S1_x_at

Description gb:NM_187586.1
DB_XREF= gi:34902257
TID=Os.32569.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.32569 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hypothetical protein (OJ1015F07.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) Hypothetical protein (OJ1015F07.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0356011/11FHA domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03540OsAffx.22284.1.S1_at11/113+1507610..1509967no apical meristem, putative, expressed
LOC_Os03g03540OsAffx.22284.1.S1_x_at11/113+1507610..1509967no apical meristem, putative, expressed
LOC_Os03g03550Os.18178.1.S1_at7/113+1529769..1532164bZIP family transcription factor, putative, expressed
LOC_Os03g03560Os.32569.1.S1_at11/113+1532402..1537496FHA domain containing protein, expressed
LOC_Os03g03560Os.32569.2.S1_x_at11/113+1532402..1537496FHA domain containing protein, expressed
LOC_Os03g03570Os.32644.1.S1_at7/113+1540546..1543309leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os03g03580Os.32644.1.S2_at5/113+1543806..1544896hypothetical protein
LOC_Os03g03590Os.17941.2.S1_x_at11/113+1546327..1550330K+ efflux antiporter, putative, expressed
LOC_Os03g03590Os.17941.1.S1_s_at11/113+1546327..1550330K+ efflux antiporter, putative, expressed
LOC_Os03g03600Os.5826.2.S1_a_at11/113+1557698..1559253Fasciclin-like arabinogalactan protein 8 precursor, putative, expressed
LOC_Os03g03610Os.14984.1.S1_a_at11/113+1560521..15741791,3-beta-glucan synthase component family protein, expressed
LOC_Os03g03610Os.54124.1.S1_at1/113+1560521..15741791,3-beta-glucan synthase component family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042306biological_processregulation of protein import into nucleus
GO:0005856cellular_componentcytoskeleton
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32569.2.S1_x_at--166--6312Chr09:22742759..22742779 (21 bp)
GATGAGTCCATCTTGATTTGCAAAG
NONE
Os.32569.2.S1_x_at--1074--5411Chr03:1533169..1533193 (25 bp)
GAAGCCTCGTTAACCCTCAAAGATG
LOC_Os03g03560
Os.32569.2.S1_x_at--213--6231Chr03:1533148..1533172 (25 bp)
GATGGCATTGGTCACTATTCTGAAG
LOC_Os03g03560
Os.32569.2.S1_x_at--62--6171Chr03:1533088..1533112 (25 bp)
GAGGATACCCAGACCAGAACCATTG
LOC_Os03g03560
Os.32569.2.S1_x_at--743--8591Chr03:1533065..1533089 (25 bp)
TGGTACAGCTGATTTGTTGGCCTCA
LOC_Os03g03560
Os.32569.2.S1_x_at--779--10871Chr03:1533049..1533073 (25 bp)
TTGGCCTCAGAAGTTGCTGGTAGCT
LOC_Os03g03560
Os.32569.2.S1_x_at--208--7531Chr03:1533019..1533043 (25 bp)
GTGGAAACAGGTCCATCTGTCAATG
LOC_Os03g03560
Os.32569.2.S1_x_at--1087--1571Chr03:1532920..1532944 (25 bp)
AGCTCAGCAGCTGATGCTTTAGTGA
LOC_Os03g03560
Os.32569.2.S1_x_at--125--1131Chr03:1532900..1532924 (25 bp)
AGTGAACTCTGATGGACAGGCTGCT
LOC_Os03g03560
Os.32569.2.S1_x_at--815--6431Chr03:1532833..1532857 (25 bp)
GATCATCATCGTGTTCTTAATGCTA
LOC_Os03g03560
Os.32569.2.S1_x_at--120--1271Chr03:1532789..1532813 (25 bp)
AGATTTCAGAAAGCAACTCCCAGGA
LOC_Os03g03560
Target Sequence 
GATGAGTCCATCTTGATTTGCAAAGATAGAGGGCAACCACAAGGAAATGAGGAAGCCTCGTTAACCCTCAAAGATGGCAT
TGGTCACTATTCTGAAGAAAAACTTGAGGTTAACTGTTCTGAGAGAAAACACGAGGATACCCAGACCAGAACCATTGGTA
CAGCTGATTTGTTGGCCTCAGAAGTTGCTGGTAGCTGGGCAGTGGAAACAGGTCCATCTGTCAATGGGGAGAATGAGTCT
CCTAGGAGCTTGGGGGAGACTACAGACCATGCCGGGGAGCAGGATGAAAATGTCAGAGGGAGCTCAGCAGCTGATGCTTT
AGTGAACTCTGATGGACAGGCTGCTGGGAGCCAGAGTAATATTGATCATGTCATCAGTAAAATAACCGATCATCATCGTG
TTCTTAATGCTATGATCGAAATTGTTGATCCAGATTTCAGAAAGCAACTCCCAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32569.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis