Browse Element(s) Details


Os.32620.2.S1_x_at

Description gb:NM_186770.1
DB_XREF= gi:34900625
GEN=P0523A04.9
TID=Os.32620.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.32620 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative selenium-binding protein (P0523A04.9), mRNA.
PROD=putative selenium-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1354011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13490OsAffx.10193.1.S1_at10/117+7727531..7730122hypothetical protein
LOC_Os07g13500OsAffx.28430.1.S1_at11/117+7731146..7731562hypothetical protein
LOC_Os07g13510NANA7+7735670..7735963hypothetical protein
LOC_Os07g13520Os.28865.1.S1_at11/117+7737420..7740465expressed protein
LOC_Os07g13530Os.12233.1.S1_a_at11/117+7741273..7745079Ras-related protein ARA-3, putative, expressed
LOC_Os07g13530Os.12233.1.S1_at11/117+7741273..7745079Ras-related protein ARA-3, putative, expressed
LOC_Os07g13530Os.12233.2.S1_x_at9/117+7741273..7745079Ras-related protein ARA-3, putative, expressed
LOC_Os07g13540Os.32620.1.S1_at11/117+7752251..7756183pentatricopeptide, putative, expressed
LOC_Os07g13540Os.32620.2.S1_x_at11/117+7752251..7756183pentatricopeptide, putative, expressed
LOC_Os07g13550OsAffx.28431.1.S1_s_at11/117+7761734..7766059hypothetical protein
LOC_Os07g13550OsAffx.28431.2.S1_at6/117+7761734..7766059hypothetical protein
LOC_Os07g13560OsAffx.25367.1.S1_at2/117+7771310..7777719retrotransposon protein, putative, unclassified
LOC_Os07g13560OsAffx.13241.1.S1_at1/117+7771310..7777719retrotransposon protein, putative, unclassified
LOC_Os07g13560Os.51887.1.S1_x_at1/117+7771310..7777719retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32620.2.S1_x_at--967--5531Chr07:7754053..7754077 (25 bp)
GAAACAGCTCTTAAGTTCCACAGTG
LOC_Os07g13540
Os.32620.2.S1_x_at--261--9071Chr07:7754015..7754039 (25 bp)
TGCATTTGGGATCATCAGCACTCCA
LOC_Os07g13540
Os.32620.2.S1_x_at--288--7491Chr07:7753989..7754013 (25 bp)
GTGGGACTCCACTTAGGATCTTCAA
LOC_Os07g13540
Os.32620.2.S1_x_at--1154--9471Chr07:7753961..7753985 (25 bp)
TCTGCGTGTTTGTGAGGATTGCCAT
LOC_Os07g13540
Os.32620.2.S1_x_at--481--1151Chr07:7753693..7753942 (25 bp)
AGTCTGGCCACAGTATATTCCTCAT
LOC_Os07g13540
Os.32620.2.S1_x_at--1070--211Chr07:7753679..7753703 (25 bp)
ATATTCCTCATCTGCGGAGAAGCGC
LOC_Os07g13540
Os.32620.2.S1_x_at--158--10491Chr07:7753653..7753677 (25 bp)
TTAACAGGCTACCTCACCTTGATGA
LOC_Os07g13540
Os.32620.2.S1_x_at--1082--5411Chr07:7753603..7753627 (25 bp)
GAACCATTATCATCGGCAGTCGGCA
LOC_Os07g13540
Os.32620.2.S1_x_at--420--8131Chr07:7753577..7753601 (25 bp)
GGACTACTCGCCATTTAGCAAGGCT
LOC_Os07g13540
Os.32620.2.S1_x_at--517--8291Chr07:7753425..7753449 (25 bp)
GGCATTGCAATTTTTCTGCTGCTTC
LOC_Os07g13540
Os.32620.2.S1_x_at--530--5131Chr07:7753391..7753415 (25 bp)
GCAAATTCTGACTGCTGCTTCTCTT
LOC_Os07g13540
Target Sequence 
GAAACAGCTCTTAAGTTCCACAGTGAGAAGCTGGCCATTGCATTTGGGATCATCAGCACTCCAAGTGGGACTCCACTTAG
GATCTTCAAGAATCTGCGTGTTTGTGAGGATTGCCATGAAGCGATCAAGTACATAAGTCTGGCCACAGTATATTCCTCAT
CTGCGGAGAAGCGCATTAACAGGCTACCTCACCTTGATGAGCCAGACATCCTCACCTCCACCTACGAACCATTATCATCG
GCAGTCGGCATGGACTACTCGCCATTTAGCAAGGCTGTGGTGAGGCAGGCGGTGGATAACCTGGTGAAGGCCAGCAACTG
GATCATCCTGATCCATGTCCTTCCCAGAGGAGCAGATGCCAGCCACAAGGAGCTCTGGAAGAGCACCGGCTCACACATGC
AGAGGCATTGCAATTTTTCTGCTGCTTCTCTTGTTCAGCAAATTCTGACTGCTGCTTCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32620.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis