Browse Element(s) Details


Os.32634.1.S1_at

Description gb:AK103455.1
DB_XREF= gi:32988664
TID=Os.32634.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32634 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative typical P-type R2R3 Myb protein (OJ1165_F02.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033129J22, full insert sequence.
FL= gb:AK103455.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4887011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48820Os.10220.1.S1_at11/117+29211788..29215712Transcription factor HBP-1b, putative, expressed
LOC_Os07g48830Os.2677.1.S1_at11/117+29218623..29220150galactinol synthase 3, putative, expressed
LOC_Os07g48840Os.31656.2.S1_at11/117+29223592..29226808Ser/Thr protein phosphatase family protein, expressed
LOC_Os07g48840Os.31656.1.S1_x_at11/117+29223592..29226808Ser/Thr protein phosphatase family protein, expressed
LOC_Os07g48850Os.31656.3.S1_at11/117+29226061..29231067pentatricopeptide, putative, expressed
LOC_Os07g48860OsAffx.5665.2.S1_at11/117+29234631..29238860hypothetical protein
LOC_Os07g48860OsAffx.5665.1.S1_x_at11/117+29234631..29238860hypothetical protein
LOC_Os07g48860OsAffx.5665.1.S1_at11/117+29234631..29238860hypothetical protein
LOC_Os07g48870Os.32634.1.S1_at11/117+29240396..29241891Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g48880Os.17676.1.S1_at11/117+29245691..29250277Importin alpha-1b subunit, putative, expressed
LOC_Os07g48880Os.17676.3.S1_x_at11/117+29245691..29250277Importin alpha-1b subunit, putative, expressed
LOC_Os07g48880Os.17676.2.S1_at11/117+29245691..29250277Importin alpha-1b subunit, putative, expressed
LOC_Os07g48890OsAffx.16767.1.S1_at11/117+29252797..29257705Poly polymerase central domain containing protein, expressed
LOC_Os07g48890OsAffx.16767.2.S1_x_at11/117+29252797..29257705Poly polymerase central domain containing protein, expressed
LOC_Os07g48900NANA7+29259577..29260110hypothetical protein
LOC_Os07g48910NANA7+29266595..29268155transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009414biological_processresponse to water deprivation
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005516molecular_functioncalmodulin binding
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32634.1.S1_at--138--9171Chr07:29241347..29241371 (25 bp)
TGCCGGAGTTTGACGTGGAGACCAT
LOC_Os07g48870
Os.32634.1.S1_at--867--5811Chr07:29241394..29241418 (25 bp)
GACCCATGGTACACGCAAATGCTTG
LOC_Os07g48870
Os.32634.1.S1_at--457--4931Chr07:29241414..29241438 (25 bp)
GCTTGGCTTGTGAAAACCGTTGACC
LOC_Os07g48870
Os.32634.1.S1_at--13--8931Chr07:29241434..29241458 (25 bp)
TGACCAAATATGATGCCTTCCTACC
LOC_Os07g48870
Os.32634.1.S1_at--945--9491Chr07:29241548..29241572 (25 bp)
TCTCCAGTTCTTACCACATATATCG
LOC_Os07g48870
Os.32634.1.S1_at--714--1571Chr07:29241651..29241675 (25 bp)
AGCTACACTTGGTAGTTTTCCTCCT
LOC_Os07g48870
Os.32634.1.S1_at--715--10291Chr07:29241667..29241691 (25 bp)
TTTCCTCCTCCATGATCATCAAGTA
LOC_Os07g48870
Os.32634.1.S1_at--1067--6991Chr07:29241754..29241778 (25 bp)
GTACGGTTAATCGATCGCTTGGTTT
LOC_Os07g48870
Os.32634.1.S1_at--295--4931Chr07:29241770..29241794 (25 bp)
GCTTGGTTTTTACTATACTGCCTGA
LOC_Os07g48870
Os.32634.1.S1_at--672--9911Chr07:29241785..29241809 (25 bp)
TACTGCCTGAATTACTCCATTCTTA
LOC_Os07g48870
Os.32634.1.S1_at--61--4311Chr07:29241801..29241825 (25 bp)
CCATTCTTAATTTCTCGGGACGGAT
LOC_Os07g48870
Target Sequence 
TGCCGGAGTTTGACGTGGAGACCATGGCCATGTGGGGCCCTGAGGACGACCCATGGTACACGCAAATGCTTGGCTTGTGA
AAACCGTTGACCAAATATGATGCCTTCCTACCTACACCTACACATTTGTGTGGATTAAAGAAGAAGGAGATGCTTATTAT
TTGGAGGTTAATTTGATTTGATTTAACCCCCAATAATCTCGTCTCCAGTTCTTACCACATATATCGTCAATTCTCAAGTA
CAGTACATTAGCTACACTTTAGTACAGTAGTAGTATTTTGGAACATGCATGGAGTAATTACTTAAGCTACACTTGGTAGT
TTTCCTCCTCCATGATCATCAAGTAAAAGCATGCATGCATGATCATGGATGGAGATAAACTACAGTGCTAATTAAATTAG
TCTGGATGTACGGTTAATCGATCGCTTGGTTTTTACTATACTGCCTGAATTACTCCATTCTTAATTTCTCGGGACGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32634.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis