Browse Element(s) Details


Os.32656.1.S1_at

Description gb:AK103348.1
DB_XREF= gi:32988557
TID=Os.32656.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32656 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033126F02, full insert sequence.
FL= gb:AK103348.1 gb:AK062026.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1727911/11exonuclease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17240Os.435.1.S1_at11/111+9910168..9914082Major Facilitator Superfamily protein, expressed
LOC_Os01g17250Os.50964.1.S1_at11/111+9914371..9918373BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os01g17250Os.436.1.S1_at11/111+9914371..9918373BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os01g17260Os.439.1.S1_at11/111+9925734..9932727Transcription factor HBP-1b, putative, expressed
LOC_Os01g17260OsAffx.2025.1.S1_x_at10/111+9925734..9932727Transcription factor HBP-1b, putative, expressed
LOC_Os01g17279Os.32656.1.S1_at11/111+9933628..9944713exonuclease family protein, expressed
LOC_Os01g17279Os.40082.1.A1_x_at7/111+9933628..9944713exonuclease family protein, expressed
LOC_Os01g17300Os.30881.3.S1_x_at11/111+9950887..9951870hypothetical protein
LOC_Os01g17300Os.30881.3.S1_at11/111+9950887..9951870hypothetical protein
LOC_Os01g17310NANA1+9953822..9955628retrotransposon, putative, centromere-specific
LOC_Os01g17320Os.16889.1.S1_a_at11/111+9959446..9963493DNA-binding protein, putative, expressed
LOC_Os01g17330Os.446.1.S1_at11/111+9963963..9965851Eukaryotic translation initiation factor 6, putative, expressed
LOC_Os01g17330OsAffx.31630.1.S1_at3/111+9963963..9965851Eukaryotic translation initiation factor 6, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0004527molecular_functionexonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32656.1.S1_at--882--1111Chr01:9934202..9934226 (25 bp)
AGTGATGGGATCTCCTGTGCAGGTT
LOC_Os01g17279
Os.32656.1.S1_at--82--8691Chr01:9934187..9934211 (25 bp)
TGTGCAGGTTAACCCATACGCCGGC
LOC_Os01g17279
Os.32656.1.S1_at--1109--5371Chr01:9934154..9934178 (25 bp)
GAAGAAGCCGATGTACTGCCACTGC
LOC_Os01g17279
Os.32656.1.S1_at--1086--1971Chr01:9934134..9934158 (25 bp)
ACTGCGGCGTGCTGAGCCAGATCAA
LOC_Os01g17279
Os.32656.1.S1_at--16--6331Chr01:9934088..9934112 (25 bp)
GATGCACGGTCGATATTTCTACGGA
LOC_Os01g17279
Os.32656.1.S1_at--1026--7591Chr01:9934038..9934062 (25 bp)
GGGCAAACTGTGACTACTGGGTATG
LOC_Os01g17279
Os.32656.1.S1_at--912--5511Chr01:9934001..9934025 (25 bp)
GAAAATGAAATCCTGCCTCCATGCG
LOC_Os01g17279
Os.32656.1.S1_at--608--6191Chr01:9933929..9933953 (25 bp)
GAGGCTACTAGTTTGCAGTTGGTTT
LOC_Os01g17279
Os.32656.1.S1_at--376--4471Chr01:9933894..9933918 (25 bp)
GCCTCCCTCGTCGTATATATGATAT
LOC_Os01g17279
Os.32656.1.S1_at--522--7851Chr01:9933834..9933858 (25 bp)
GGTAGTGTCTAACCTGTCAATACTG
LOC_Os01g17279
Os.32656.1.S1_at--263--4931Chr01:9933659..9933683 (25 bp)
GCTTGCAGGTTGTTTTGCTCACATT
LOC_Os01g17279
Target Sequence 
AGTGATGGGATCTCCTGTGCAGGTTAACCCATACGCCGGCATCACAGTGAAGAAGCCGATGTACTGCCACTGCGGCGTGC
TGAGCCAGATCAAAGTTACCTACAGACCAGGCCCGATGCACGGTCGATATTTCTACGGATGCGGAAACTGGACATCCACA
AGGGGGGCAAACTGTGACTACTGGGTATGGTTGTCATGAAAGAAAATGAAATCCTGCCTCCATGCGAAATCCGAAATCCG
AAGGAGGGCAAAGACCTGGAGCTTTTAACAAGGGAGGCTACTAGTTTGCAGTTGGTTTGGCTTGCTGCGCCTCCCTCGTC
GTATATATGATATAACTTTGCTCATAAGACTATTGGAAGTTTGAACTAGGTAGTGTCTAACCTGTCAATACTGACTTCTG
TTGATAGAAGAGAATGGGGGGGATCAGATGCTGCTTAGGATGCTTTATCCATGAATAATCTTAAGTTTGTGGACGCTTGG
TTTTAACTTAAAAGATGGGACCATCGTAGGTGTGATTTGTGCGACAAGATGTCTGAAGTTTGGGCTTGCAGGTTGTTTTG
CTCACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32656.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis