Browse Element(s) Details


Os.3266.1.S1_x_at

Description gb:AK058780.1
DB_XREF= gi:32968798
TID=Os.3266.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.3266 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytochrome (OSJNBa0076F20.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-002-C06, full insert sequence.
FL= gb:AK058780.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3742011/11Cytochrome b5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37340Os.4666.1.S1_at11/1110+19671456..19674934Cys/Met metabolism PLP-dependent enzyme family protein, expressed
LOC_Os10g37350OsAffx.6892.1.S1_x_at11/1110+19681835..19682277expressed protein
LOC_Os10g37370Os.2235.3.S1_x_at11/1110+19684581..19686956retrotransposon protein, putative, unclassified
LOC_Os10g37400OsAffx.6894.1.S1_x_at11/1110+19693070..19693480hypothetical protein
LOC_Os10g37410Os.23199.1.S1_at11/1110+19695299..19698718RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os10g37420Os.3266.1.S1_at11/1110+19699021..19701533Cytochrome b5, putative, expressed
LOC_Os10g37420Os.3266.1.S1_x_at11/1110+19699021..19701533Cytochrome b5, putative, expressed
LOC_Os10g37420Os.57453.1.S1_x_at9/1110+19699021..19701533Cytochrome b5, putative, expressed
LOC_Os10g37420Os.25385.1.S1_at8/1110+19699021..19701533Cytochrome b5, putative, expressed
LOC_Os10g37430Os.3264.1.S1_at11/1110+19701929..19707533expressed protein
LOC_Os10g37440NANA10+19708143..19708469hypothetical protein
LOC_Os10g37450OsAffx.20195.1.S1_at11/1110+19715264..19716565hypothetical protein
LOC_Os10g37459NANA10+19720121..19720617hypothetical protein
LOC_Os10g37468NANA10+19721410..19725783retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0005489molecular_functionelectron transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3266.1.S1_x_at--530--10371Chr10:19699641..19699665 (25 bp)
TTTTATGGATGAGCACCCTGGTGGC
LOC_Os10g37420
Os.3266.1.S1_x_at--395--1811Chr10:19699627..19699651 (25 bp)
ACCCTGGTGGCGATGAAGTGTTGCT
LOC_Os10g37420
Os.3266.1.S1_x_at--334--5331Chr10:19699615..19699637 (23 bp)
GAAGTGTTGCTAGCAGTAACTGGCA
LOC_Os10g37420
Os.3266.1.S1_x_at--468--8511Chr10:19699482..19699505 (24 bp)
TGGCAAAGACGCAACCAATGATTTT
LOC_Os10g37420
Os.3266.1.S1_x_at--362--6551Chr10:19699463..19699487 (25 bp)
GATTTTGAAGACATTGGCCACAGTG
LOC_Os10g37420
Os.3266.1.S1_x_at--1044--5671Chr10:19699454..19699478 (25 bp)
GACATTGGCCACAGTGAATCAGCAA
LOC_Os10g37420
Os.3266.1.S1_x_at--887--6591Chr10:19699398..19699422 (25 bp)
GATTGATGCTTCAACCATCCCAGTA
LOC_Os10g37420
Os.3266.1.S1_x_at--644--1171Chr10:19699377..19699401 (25 bp)
AGTAAAGCGTACTCATGTCACTCCC
LOC_Os10g37420
Os.3266.1.S1_x_at--277--2671Chr10:19699348..19699372 (25 bp)
AAGCGCCCGGCAACCCAGACAAGGG
LOC_Os10g37420
Os.3266.1.S1_x_at--871--3411Chr10:19699333..19699357 (25 bp)
CAGACAAGGGCGATGACATGCTCAT
LOC_Os10g37420
Os.3266.1.S1_x_at--358--5671Chr10:19699319..19699343 (25 bp)
GACATGCTCATTAAGATCTTGCAGT
LOC_Os10g37420
Target Sequence 
TTTTATGGATGAGCACCCTGGTGGCGATGAAGTGTTGCTAGCAGTAACTGGCAAAGACGCAACCAATGATTTTGAAGACA
TTGGCCACAGTGAATCAGCAAGGGAGATGATGGAGAAGTATCTCATTGGGGAGATTGATGCTTCAACCATCCCAGTAAAG
CGTACTCATGTCACTCCCCAGCAAGCGCCCGGCAACCCAGACAAGGGCGATGACATGCTCATTAAGATCTTGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3266.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis