Browse Element(s) Details


Os.32667.1.S1_at

Description gb:AK103304.1
DB_XREF= gi:32988513
TID=Os.32667.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32667 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative endo-beta-1,4-glucanase (P0489G09.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033125D14, full insert sequence.
FL= gb:AK103304.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1207011/11Glycosyl hydrolase family 9 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12020Os.37822.2.S2_at11/111+6537810..6539878Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g12020Os.37822.2.S1_at11/111+6537810..6539878Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g12030Os.37822.1.A2_at4/111+6538773..6541263Glycosyl hydrolase family 9 protein
LOC_Os01g12030Os.32667.2.S1_x_at1/111+6538773..6541263Glycosyl hydrolase family 9 protein
LOC_Os01g12040OsAffx.22940.5.S1_x_at11/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.22940.2.S1_s_at11/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.22940.5.S1_at11/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.22940.1.S1_s_at11/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040Os.35344.3.S1_x_at10/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040Os.35344.18.S1_x_at10/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.22940.2.S1_at8/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.22940.3.S1_x_at8/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.31552.2.S1_at1/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12060Os.14645.1.S1_s_at3/111+6555733..6556179hypothetical protein
LOC_Os01g12070Os.32667.1.S1_at11/111+6561499..6564942Glycosyl hydrolase family 9 protein, expressed
LOC_Os01g12070Os.32667.2.S1_x_at11/111+6561499..6564942Glycosyl hydrolase family 9 protein, expressed
LOC_Os01g12080Os.12263.1.S1_at11/111+6568846..6573967uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os01g12090Os.3494.1.S1_at11/111+6580489..6583909expressed protein
LOC_Os01g12100OsAffx.22100.1.S1_x_at11/111+6584147..6584745expressed protein
LOC_Os01g12100Os.54460.1.A1_at1/111+6584147..6584745expressed protein
LOC_Os01g12110Os.3496.1.S1_at11/111+6587702..6588938expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32667.1.S1_at--593--2691Chr01:6561818..6561842 (25 bp)
AAGCTCGTCTGAAATCAATCAAACG
LOC_Os01g12070
Os.32667.1.S1_at--265--2371Chr01:6561798..6561822 (25 bp)
AAACGTGCAACGAACCATTAATTAG
LOC_Os01g12070
Os.32667.1.S1_at--290--2831Chr01:6561750..6561774 (25 bp)
AAGTTCGTGTGTGCACGTTTCACCA
LOC_Os01g12070
Os.32667.1.S1_at--684--1891Chr01:6561736..6561760 (25 bp)
ACGTTTCACCAGTTTGTGTGCGTGT
LOC_Os01g12070
Os.32667.1.S1_at--209--7471Chr01:6561721..6561745 (25 bp)
GTGTGCGTGTGTGAGATTGTTAATT
LOC_Os01g12070
Os.32667.1.S1_at--707--6112Chr01:6561670..6561694 (25 bp)
GAGTGATGTGGCCAGTTACAATATA
LOC_Os01g12070
Os.32667.1.S1_at--322--10491Chr01:6561655..6561679 (25 bp)
TTACAATATAATCTCGGCCATCCTC
LOC_Os01g12070
Os.32667.1.S1_at--230--3511Chr01:6561630..6561654 (25 bp)
CATGTCCTGATCCATGTCCATGTAA
LOC_Os01g12070
Os.32667.1.S1_at--14--6331Chr01:6561605..6561629 (25 bp)
GATGCAAGGTGTATGGCTAGTGTTT
LOC_Os01g12070
Os.32667.1.S1_at--891--7871Chr01:6561569..6561593 (25 bp)
GGTTATCAATGTATCATCCAGGCAG
LOC_Os01g12070
Os.32667.1.S1_at--418--3531Chr01:6561555..6561579 (25 bp)
CATCCAGGCAGTAGAGCAGGTTGAT
LOC_Os01g12070
Target Sequence 
AAGCTCGTCTGAAATCAATCAAACGTGCAACGAACCATTAATTAGTTCCTACTAAAATTTACATTTACAAGTTCGTGTGT
GCACGTTTCACCAGTTTGTGTGCGTGTGTGAGATTGTTAATTAGGTTTACATGTCGAGAGGTAACATGGAGTGATGTGGC
CAGTTACAATATAATCTCGGCCATCCTCCATGTCCTGATCCATGTCCATGTAAGATGCAAGGTGTATGGCTAGTGTTTGG
AATAATATGGGTTATCAATGTATCATCCAGGCAGTAGAGCAGGTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32667.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis