Browse Element(s) Details


Os.32667.2.S1_x_at

Description gb:NM_188491.1
DB_XREF= gi:34904065
GEN=P0489G09.22
TID=Os.32667.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.32667 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative endo-beta-1,4-glucanase (P0489G09.22), mRNA.
PROD=putative endo-beta-1,4-glucanase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1207011/11Glycosyl hydrolase family 9 protein, expressed
LOC_Os01g120301/11Glycosyl hydrolase family 9 protein
LOC_Os05g121501/11Glycosyl hydrolase family 9 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12020Os.37822.2.S2_at11/111+6537810..6539878Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g12020Os.37822.2.S1_at11/111+6537810..6539878Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g12030Os.37822.1.A2_at4/111+6538773..6541263Glycosyl hydrolase family 9 protein
LOC_Os01g12030Os.32667.2.S1_x_at1/111+6538773..6541263Glycosyl hydrolase family 9 protein
LOC_Os01g12040OsAffx.22940.5.S1_x_at11/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.22940.2.S1_s_at11/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.22940.5.S1_at11/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.22940.1.S1_s_at11/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040Os.35344.3.S1_x_at10/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040Os.35344.18.S1_x_at10/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.22940.2.S1_at8/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.22940.3.S1_x_at8/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.31552.2.S1_at1/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12060Os.14645.1.S1_s_at3/111+6555733..6556179hypothetical protein
LOC_Os01g12070Os.32667.1.S1_at11/111+6561499..6564942Glycosyl hydrolase family 9 protein, expressed
LOC_Os01g12070Os.32667.2.S1_x_at11/111+6561499..6564942Glycosyl hydrolase family 9 protein, expressed
LOC_Os01g12080Os.12263.1.S1_at11/111+6568846..6573967uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os01g12090Os.3494.1.S1_at11/111+6580489..6583909expressed protein
LOC_Os01g12100OsAffx.22100.1.S1_x_at11/111+6584147..6584745expressed protein
LOC_Os01g12100Os.54460.1.A1_at1/111+6584147..6584745expressed protein
LOC_Os01g12110Os.3496.1.S1_at11/111+6587702..6588938expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32667.2.S1_x_at--564--1071Chr01:6562829..6562853 (25 bp)
AGGGCCAGCCCGTCGTTCGTGAGCT
LOC_Os01g12070
Os.32667.2.S1_x_at--704--1873Chr05:6921909..6922114 (25 bp)
ACGAGCACGACGACTTCGCCGACGA
LOC_Os05g12150
Os.32667.2.S1_x_at--187--6031Chr01:6562700..6562724 (25 bp)
GAGAGGAACAACTACGAGCAGACGG
LOC_Os01g12070
Os.32667.2.S1_x_at--1032--8271Chr01:6562594..6562618 (25 bp)
GGCTTGGCCAGTCACTTCAACACGG
LOC_Os01g12070
Os.32667.2.S1_x_at--995--7091Chr01:6562140..6562608 (25 bp)
GTCACTTCAACACGGTGCCAATCAC
LOC_Os01g12070
Os.32667.2.S1_x_at--170--7791Chr01:6562127..6562151 (25 bp)
GGTGCCAATCACCAGCATGCGTCGC
LOC_Os01g12070
Os.32667.2.S1_x_at--949--591Chr01:6562111..6562135 (25 bp)
ATGCGTCGCCGGTGGAGATCGAGCA
LOC_Os01g12070
Os.32667.2.S1_x_at--797--7371Chr01:6562028..6562052 (25 bp)
GTGAGCAACAGGTCGCCGGCGGGCG
LOC_Os01g12070
Os.32667.2.S1_x_at--817--8551Chr01:6561994..6562018 (25 bp)
TGGAGGAGCTCCACATCGGCATCGG
LOC_Os01g12070
Os.32667.2.S1_x_at--118--4792Chr06:10000476..10000498 (23 bp)
GCTCCACATCGGCATCGGCAAGCTG
NONE
Os.32667.2.S1_x_at--338--4052Chr01:6561931..6561955 (25 bp)
CGAGGTACGGCTACGTGCTCCCGAG
LOC_Os01g12070
Target Sequence 
AGGGCCAGCCCGTCGTTCGTGAGCTGCAGGGAGGGGTACGCGAGCTGGTACGGGCGGCGGGGCGGCAACCCCAACCTGCT
CGACGGCGCCGTCGTCGGCGGCCCCGACGAGCACGACGACTTCGCCGACGAGAGGAACAACTACGAGCAGACGGAGGCGG
CCACCTACAACAACGCCCCGCTCATGGGCATCCTCGCCCGTCTCGCCGCCGGCCATGGCGCCCGCGCCCGCGGCCGGCTT
GGCCAGTCACTTCAACACGGTGCCAATCACCAGCATGCGTCGCCGGTGGAGATCGAGCAGAAGGCGACGGCGTCGTGGGA
GAAGGACGGGAGGACGTACCACCGGTACGCGGTGACGGTGAGCAACAGGTCGCCGGCGGGCGGCAAGACGGTGGAGGAGC
TCCACATCGGCATCGGCAAGCTGTACGGCCCGGTGTGGGGGCTCGAGAAGGCGGCGAGGTACGGCTACGTGCTCCCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32667.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis